Detailed information of component protein


Summary

Component ID T6CP013061
Component protein type TssA
T6SS ID (Type) T6SS01292 experimental (Type i3)
Strain Burkholderia pseudomallei K96243
Replicon chromosome II
Sequence Protein sequence (360 a.a.); Nucleotide sequence (1080 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) AQ15_4686
Coordinate (Strand) 1466600..1467679 (-)
NCBI ID 772956845
GenBank CP009537
Uniprot ID Q63IH2_BURPS
KEGG ID bps:BPSS2101
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 2.1e-35 12..134
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-359 MQSSDPIESLLAGVAPDAPCGANLEYEQDFLRLQESATPRPEQQYGDTVIPAEAPDWSAVERLALELTARTKDLRVAAHLARSWTELRGMPGYADGLRLVAGMLDRWWDDVHPRLDADGDHDPAPRANALAEIAGAHGCARAARRQALFDGGPSVRDAERVFDGRDGGEHGYPGGRERLIADLVRARDGGQPTLQAAFAALDALDAIRARVASALGGEWVPDASDFEKALRRIVRDGLPPPAAAPAATNGAANVANAAHGGAANGVTNSAANGAASGGAPAFAANGRAWRDAELTSRDDVQLGLEKMCRYFELHEPSHPAPILLRRAQRLLSLDFYEIIRDLAPESLPKLDLLSGQRNE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9757 - -


  Protein sequence: 360 a.a.    

>T6CP013061 CP009537:c1467679-1466600 [Burkholderia pseudomallei K96243] [TssA]
MQSSDPIESLLAGVAPDAPCGANLEYEQDFLRLQESATPRPEQQYGDTVIPAEAPDWSAVERLALELTARTKDLRVAAHL
ARSWTELRGMPGYADGLRLVAGMLDRWWDDVHPRLDADGDHDPAPRANALAEIAGAHGCARAARRQALFDGGPSVRDAER
VFDGRDGGEHGYPGGRERLIADLVRARDGGQPTLQAAFAALDALDAIRARVASALGGEWVPDASDFEKALRRIVRDGLPP
PAAAPAATNGAANVANAAHGGAANGVTNSAANGAASGGAPAFAANGRAWRDAELTSRDDVQLGLEKMCRYFELHEPSHPA
PILLRRAQRLLSLDFYEIIRDLAPESLPKLDLLSGQRNE*

  Nucleotide sequence: 1080 bp    

>T6CP013061 CP009537:c1467679-1466600 [Burkholderia pseudomallei K96243] [TssA]
ATGCAGAGTTCAGACCCGATCGAATCGTTGCTCGCCGGCGTCGCGCCCGACGCGCCGTGCGGCGCGAATCTCGAATACGA
GCAGGATTTCCTGCGGCTGCAGGAGAGCGCGACGCCGCGGCCCGAACAGCAGTACGGCGACACCGTGATCCCGGCCGAAG
CGCCGGACTGGAGCGCGGTCGAGCGTCTCGCGCTCGAGCTGACGGCGCGCACGAAGGATCTGCGCGTGGCCGCGCATCTC
GCGCGCAGTTGGACCGAACTGCGCGGCATGCCCGGCTACGCGGACGGGCTGAGGCTCGTCGCGGGGATGCTGGACCGGTG
GTGGGACGACGTGCATCCGCGCCTGGACGCCGACGGCGACCACGACCCGGCCCCGCGCGCGAACGCGCTGGCGGAAATCG
CGGGCGCGCACGGCTGCGCGCGCGCCGCGCGCCGGCAGGCGCTCTTCGATGGCGGCCCGAGCGTGCGCGATGCCGAGCGC
GTGTTCGATGGCCGCGACGGCGGCGAGCACGGCTACCCGGGCGGCCGCGAGCGGCTGATCGCCGATCTGGTTCGCGCGCG
CGACGGCGGGCAGCCGACGCTGCAGGCGGCGTTCGCCGCGCTCGACGCGCTCGATGCGATTCGCGCGCGCGTCGCATCGG
CGCTCGGCGGCGAATGGGTGCCCGACGCGAGCGACTTCGAGAAGGCGCTGCGCCGGATCGTGCGCGACGGGTTGCCGCCG
CCCGCGGCCGCGCCCGCCGCGACAAACGGCGCGGCGAATGTGGCGAATGCGGCGCACGGCGGCGCGGCAAACGGCGTCAC
GAACAGTGCCGCGAACGGCGCGGCTTCGGGCGGCGCGCCGGCTTTCGCCGCGAACGGCCGCGCGTGGCGCGATGCGGAGC
TGACGAGCCGCGACGACGTTCAGCTCGGCCTCGAAAAAATGTGCCGCTACTTCGAGCTGCACGAGCCGAGCCATCCGGCG
CCGATCCTGCTGCGCCGCGCGCAGCGGCTGCTGTCGCTCGACTTCTACGAAATCATCCGGGATCTCGCGCCGGAGAGCCT
GCCGAAGCTCGACTTGCTGAGCGGCCAGCGCAACGAATGA