Detailed information of component protein


Summary

Component ID T6CP013059
Component protein type TssC
T6SS ID (Type) T6SS01292 experimental (Type i3)
Strain Burkholderia pseudomallei K96243
Replicon chromosome II
Sequence Protein sequence (503 a.a.); Nucleotide sequence (1509 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) AQ15_4684
Coordinate (Strand) 1464458..1465966 (-)
NCBI ID 772957625
GenBank CP009537
Uniprot ID Q63IH4_BURPS
KEGG ID bps:BPSS2099
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 3.9e-134 71..372
VipB_2 PF18945.2 1.4e-43 383..494
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-502 MNERAQTQADTRAAAQPVVARDEFAALLQKEFKPKTAEARESVERAVRTLAQQALEHTVGMTTDAYGSVKQIIAEIDRKLSEQINLILHHQEFQTLEGAWRGLHYLVTNTETDELLKIKALPASRNELARTLKRYKGVAWDQSPLFRKVYEEEYGQFGGEPFGCLVGDFHFNHSPPDVEMLGELSKIAAAAHAPFIAGASPELMQMDSWQELANPRDLTKIFQNTEYAAWRSLRQSEDSRYVGLAMPRFLARLPYGARTNPVDEFDFEEDTGAASHDRYTWANSAYAMAANINRSFKLYGWCSSIRGVESGGAVQGLPCHTFPTDDGGVDQKCPTEIAISDRREAELAKNGFMPFVHRKNSDFAAFIGAQSLYQPAEYHDPDATANARLSGRLPYLFACCRFAHYLKCIVRDKIGSFRERDDMERWLNDWIMNYVDGDPANSSQETKARKPLAAAQVVVEEIDDNPGYYASKFFLRPHYQLEGLTVSLRLISKLPSAKAAGE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9618 - -


  Protein sequence: 503 a.a.    

>T6CP013059 CP009537:c1465966-1464458 [Burkholderia pseudomallei K96243] [TssC]
MNERAQTQADTRAAAQPVVARDEFAALLQKEFKPKTAEARESVERAVRTLAQQALEHTVGMTTDAYGSVKQIIAEIDRKL
SEQINLILHHQEFQTLEGAWRGLHYLVTNTETDELLKIKALPASRNELARTLKRYKGVAWDQSPLFRKVYEEEYGQFGGE
PFGCLVGDFHFNHSPPDVEMLGELSKIAAAAHAPFIAGASPELMQMDSWQELANPRDLTKIFQNTEYAAWRSLRQSEDSR
YVGLAMPRFLARLPYGARTNPVDEFDFEEDTGAASHDRYTWANSAYAMAANINRSFKLYGWCSSIRGVESGGAVQGLPCH
TFPTDDGGVDQKCPTEIAISDRREAELAKNGFMPFVHRKNSDFAAFIGAQSLYQPAEYHDPDATANARLSGRLPYLFACC
RFAHYLKCIVRDKIGSFRERDDMERWLNDWIMNYVDGDPANSSQETKARKPLAAAQVVVEEIDDNPGYYASKFFLRPHYQ
LEGLTVSLRLISKLPSAKAAGE*

  Nucleotide sequence: 1509 bp    

>T6CP013059 CP009537:c1465966-1464458 [Burkholderia pseudomallei K96243] [TssC]
ATGAATGAACGTGCCCAAACCCAGGCCGACACGCGCGCCGCCGCCCAGCCCGTGGTCGCGCGCGACGAGTTCGCCGCGCT
GCTGCAAAAGGAGTTCAAGCCGAAGACGGCGGAGGCGCGCGAATCGGTCGAGCGCGCGGTGCGCACGCTCGCGCAGCAGG
CGCTCGAGCACACGGTCGGCATGACGACCGACGCTTACGGCAGCGTCAAGCAGATCATCGCCGAGATCGACCGCAAGCTC
TCCGAGCAGATCAACCTGATCCTGCATCATCAGGAGTTCCAGACGCTCGAAGGCGCGTGGCGCGGCCTGCACTACCTCGT
CACGAACACCGAGACCGACGAGCTGCTGAAGATCAAGGCACTGCCCGCGTCGCGCAACGAGCTCGCGCGCACGCTCAAGC
GCTACAAGGGCGTCGCGTGGGATCAGAGCCCGCTGTTTCGCAAGGTCTACGAAGAAGAGTACGGCCAGTTCGGCGGCGAG
CCGTTCGGCTGCCTCGTCGGCGATTTCCATTTCAACCACAGTCCGCCCGACGTCGAGATGCTCGGCGAGCTGTCGAAGAT
CGCGGCAGCCGCGCATGCGCCGTTCATCGCGGGCGCGTCGCCCGAGCTGATGCAGATGGATTCGTGGCAGGAGCTCGCCA
ATCCGCGTGATCTGACGAAGATCTTCCAGAACACCGAATACGCCGCGTGGCGCAGCCTGCGCCAGTCCGAGGATTCGCGC
TACGTCGGGCTCGCGATGCCGCGCTTTCTCGCGCGGCTGCCGTACGGCGCGCGCACGAATCCCGTCGACGAATTCGACTT
CGAGGAGGATACCGGCGCCGCGAGCCACGACCGCTACACGTGGGCGAATTCCGCGTACGCGATGGCGGCGAACATCAACC
GCTCGTTCAAGCTGTACGGCTGGTGCTCGTCGATCCGCGGCGTCGAATCGGGCGGCGCGGTGCAAGGGCTGCCGTGCCAC
ACGTTCCCCACCGACGACGGCGGCGTCGACCAGAAATGCCCGACCGAGATCGCGATCAGCGACCGCCGCGAGGCCGAGCT
CGCGAAGAACGGCTTCATGCCGTTCGTACATCGAAAGAATTCGGATTTCGCGGCGTTCATCGGCGCGCAGTCGCTGTATC
AGCCCGCCGAGTATCACGATCCCGACGCGACCGCGAACGCGCGGCTCTCGGGCCGCCTGCCGTACCTGTTCGCGTGCTGC
CGCTTCGCGCATTACCTGAAGTGCATCGTGCGCGACAAGATCGGCTCGTTTCGCGAGCGCGACGACATGGAGCGCTGGCT
CAACGACTGGATCATGAACTACGTCGACGGCGATCCGGCGAACTCGTCGCAGGAGACGAAGGCGCGCAAGCCGCTCGCGG
CCGCGCAGGTCGTCGTCGAGGAGATCGACGACAACCCCGGCTATTACGCGTCGAAATTCTTCCTGCGGCCGCATTACCAA
CTGGAAGGGCTCACCGTGTCGCTGCGGCTCATCTCGAAGCTGCCGTCGGCGAAGGCGGCGGGCGAATGA