Detailed information of component protein


Summary

Component ID T6CP013057
Component protein type TssE
T6SS ID (Type) T6SS01292 experimental (Type i3)
Strain Burkholderia pseudomallei K96243
Replicon chromosome II
Sequence Protein sequence (183 a.a.); Nucleotide sequence (549 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) AQ15_4682
Coordinate (Strand) 1463340..1463888 (-)
NCBI ID 772957379
GenBank CP009537
Uniprot ID -
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
GPW_gp25 PF04965.16 6.9e-22 47..156

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-182 MNDDVRAAGGVRAAHDRLQPALLDRLTDAERERRTEPPDAQAIGGERLRAAVLRDLAWLLNTRNGEDGFVDWSAFAHAQASVLNYGMRPLVGKPMSGVERMSVEASIRDAIVRFEPRIAPDSVEVRSVLDAPGGAAGERRHNVLMFEIKGTLWSIPHPVEFVLRSDLDLETGAMALHPAAGG



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9909 - -



  Protein sequence: 183 a.a.    

>T6CP013057 CP009537:c1463888-1463340 [Burkholderia pseudomallei K96243] [TssE]
MNDDVRAAGGVRAAHDRLQPALLDRLTDAERERRTEPPDAQAIGGERLRAAVLRDLAWLLNTRNGEDGFVDWSAFAHAQA
SVLNYGMRPLVGKPMSGVERMSVEASIRDAIVRFEPRIAPDSVEVRSVLDAPGGAAGERRHNVLMFEIKGTLWSIPHPVE
FVLRSDLDLETGAMALHPAAGG*

  Nucleotide sequence: 549 bp    

>T6CP013057 CP009537:c1463888-1463340 [Burkholderia pseudomallei K96243] [TssE]
ATGAATGACGACGTGCGAGCCGCGGGCGGCGTGCGCGCCGCGCATGACCGGCTGCAGCCGGCGCTGCTCGACCGGCTGAC
CGACGCCGAGCGCGAGCGGCGCACCGAGCCGCCCGACGCGCAGGCGATCGGCGGCGAGCGCCTGCGCGCGGCGGTGCTGC
GCGATCTGGCGTGGCTGCTCAACACGCGCAACGGCGAGGACGGCTTCGTCGACTGGTCGGCGTTCGCGCACGCGCAGGCG
TCGGTGCTCAACTACGGGATGCGGCCGCTCGTCGGCAAGCCGATGTCGGGCGTCGAGCGGATGTCGGTCGAGGCGTCGAT
CCGCGATGCGATCGTGCGTTTCGAGCCGCGTATCGCGCCCGACAGCGTCGAGGTGCGCAGCGTGCTCGACGCGCCGGGCG
GCGCGGCGGGCGAGCGCCGGCACAACGTGCTGATGTTCGAGATCAAGGGCACGCTGTGGTCGATTCCGCATCCGGTCGAG
TTCGTGCTGCGCTCGGACCTCGATCTGGAGACGGGCGCGATGGCGCTGCACCCGGCGGCGGGAGGCTGA