Detailed information of component protein


Summary

Component ID T6CP012989
Component protein type TssH
T6SS ID (Type) T6SS01000 insolico (Type i4b)
Strain Acinetobacter baumannii ATCC 17978
Replicon chromosome
Sequence Protein sequence (893 a.a.); Nucleotide sequence (2679 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) A1S_1307
Coordinate (Strand) 1533136..1535814 (+)
NCBI ID ABO11735.2
GenBank CP000521
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 3.1e-41 605..773
AAA_lid_9 PF17871.3 1.3e-24 369..461
AAA PF00004.31 1.2e-11 229..342
ClpB_D2-small PF10431.11 2.3e-11 779..849
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 893 a.a.    

>T6CP012989 CP000521:1533136-1535814 [Acinetobacter baumannii ATCC 17978] [TssH]
MSSLKILITKLSTAARTALEKSANACVLQQNYEIEIEHLFLELLNQPLENDLKILLKKYKISADALADDLKETISQLPKG
NTRTPIFAKSIVRLFEQAWLLASAEQNPVIRSGHLLVALLTAPDLYQIATRASSLFDLFPIDSMKHKFLEICEKSVEQQE
ESKKSSQADELEQAATPTAKTQKTPALDQYTINLTEKAKNGGIDPVIGREYEIRLMLDILMRRRQNNPILTGEPGVGKTA
VVEGLALKIAQGLVPEALKNVHLHVLDMGLLQAGASVKGEFENRLKQVIQEVQSSAHPIILFIDEAHTLIGAGGQAGQND
AANLLKPALARGELRTIAATTWAEYKQYFEKDAALSRRFQVVKVEEPTEEVAVDMLRAMIPVMQKHFNLQIDDEAIVTAV
HASHRYISGRQLPDKAVSVLDTAAARVALTQNAQPVKLDQLKAQEHNLKLEQQILENEHRQIPIHHERLENLKNQLESLQ
SEIQETQEQWQKELELVRKIQELEAQSHSNESEAYDQINLIRKDLADIQGQQPLVFERVNSQIINEIISDWTGIPVGKMV
NDEIKQILTLEDKLGERVMGQDYALTQLVQGIKTSKAKLEDPNKPQGVFLLVGPSGVGKTETALALANELYGGEQHLITI
NMSEYQEAHTVSSLKGAPPGYVGYGQGGVLTEAVRRNPYSVVLLDEIEKAHSDVQELFYQVFDKGTLEDGEGRVIDFKNT
TILLTSNTGSSAIMQACLNQPVEKWPTAEDLIEHLKPSLYKQFKPAFLGRMRVVPYFPLHDDLLVRIIKHKLGKITARIE
KQYGTEVQYSDDLVELLLSRCTEVDSGARNVDNILNSTVLPALATEILVALADQKLPKLIMIDAKDDEIQYLLDPVAKPA
KKRTSKKLKSEV*

  Nucleotide sequence: 2679 bp    

>T6CP012989 CP000521:1533136-1535814 [Acinetobacter baumannii ATCC 17978] [TssH]
ATGAGTAGTTTAAAAATTTTAATTACAAAACTTTCTACAGCTGCACGCACCGCTTTAGAAAAATCTGCTAATGCTTGTGT
TCTTCAGCAAAACTACGAAATTGAAATTGAACATTTATTTTTAGAGTTACTTAATCAGCCTTTAGAAAACGATTTAAAAA
TTTTATTAAAAAAATATAAAATCTCAGCAGATGCTTTAGCAGATGATTTAAAAGAAACAATTTCTCAATTACCAAAAGGT
AATACACGTACTCCAATTTTTGCTAAATCAATTGTTCGTTTATTTGAACAAGCTTGGTTATTGGCTTCAGCAGAACAAAA
TCCTGTCATTCGTAGTGGTCATTTACTGGTTGCATTATTAACTGCACCTGACCTCTATCAAATTGCAACGAGAGCTTCGA
GTTTATTTGATCTTTTCCCGATAGACTCAATGAAACATAAGTTTCTTGAAATTTGTGAAAAAAGTGTAGAACAACAAGAA
GAATCAAAAAAATCTTCACAAGCAGATGAATTAGAACAAGCCGCGACTCCAACTGCAAAAACTCAAAAAACACCTGCTTT
AGATCAATATACAATTAATTTAACTGAAAAAGCGAAGAATGGCGGGATTGACCCTGTTATTGGGCGTGAATATGAAATTC
GTTTGATGCTCGATATTTTAATGCGTAGACGTCAGAACAACCCAATTTTAACTGGTGAGCCAGGTGTAGGTAAAACAGCT
GTAGTTGAAGGGTTGGCTTTAAAAATTGCTCAAGGTTTAGTTCCTGAAGCATTAAAAAATGTTCATTTGCACGTTTTAGA
TATGGGACTTTTGCAAGCTGGGGCAAGTGTTAAAGGTGAATTTGAAAACCGTTTAAAGCAAGTTATTCAAGAAGTCCAAT
CATCGGCTCATCCTATTATTTTATTTATTGATGAAGCACATACGCTTATTGGAGCTGGTGGCCAAGCGGGGCAAAACGAT
GCTGCCAATCTTTTAAAACCTGCACTTGCACGTGGCGAGTTACGTACTATTGCTGCAACGACATGGGCAGAATATAAACA
GTATTTTGAGAAAGATGCTGCATTGAGCCGCCGTTTTCAGGTGGTAAAGGTTGAAGAACCGACCGAAGAAGTTGCTGTAG
ATATGTTACGTGCAATGATTCCCGTAATGCAAAAGCACTTTAATTTACAAATTGATGATGAAGCAATTGTAACGGCTGTA
CATGCCTCTCATCGCTATATTAGTGGTCGTCAACTCCCAGACAAAGCAGTAAGTGTTCTTGATACTGCGGCAGCGCGTGT
AGCTTTGACCCAAAATGCACAGCCAGTCAAACTTGATCAATTAAAAGCACAAGAACATAACTTAAAGCTTGAGCAACAAA
TTTTGGAAAATGAACACCGTCAAATTCCAATACATCATGAAAGATTAGAAAATCTGAAAAACCAACTAGAGTCATTACAA
AGTGAGATCCAAGAGACTCAGGAACAATGGCAAAAAGAATTAGAGCTAGTTCGTAAAATTCAGGAATTAGAAGCGCAGAG
CCATTCTAATGAGTCTGAAGCCTACGATCAGATTAATTTAATACGCAAAGACCTTGCTGATATTCAGGGACAACAGCCGT
TAGTTTTTGAGCGAGTAAACTCTCAGATCATCAATGAAATTATTTCTGATTGGACAGGTATTCCTGTTGGGAAAATGGTC
AATGATGAAATTAAGCAGATTTTAACGCTTGAAGATAAATTAGGTGAGCGTGTAATGGGGCAAGATTATGCACTTACACA
ATTAGTTCAAGGGATTAAAACTTCAAAAGCTAAATTAGAAGATCCAAATAAACCTCAAGGGGTGTTCCTTTTAGTCGGGC
CTAGTGGGGTTGGTAAAACTGAAACTGCTTTAGCCTTAGCTAATGAGTTATATGGCGGTGAACAGCATTTAATCACGATT
AATATGTCTGAGTATCAAGAAGCACATACTGTCTCTTCGCTTAAAGGTGCTCCTCCAGGCTATGTTGGCTATGGTCAGGG
TGGGGTTTTAACTGAAGCTGTACGCCGTAATCCTTATAGTGTTGTGTTACTTGACGAAATTGAAAAAGCACATAGCGATG
TTCAGGAGTTGTTCTATCAAGTATTTGATAAAGGCACTTTAGAGGATGGTGAAGGGCGCGTTATTGATTTTAAAAACACG
ACAATCTTATTAACTTCAAATACAGGCTCGAGTGCAATTATGCAGGCATGTTTAAATCAGCCTGTAGAAAAATGGCCTAC
CGCAGAAGATTTAATCGAACATTTAAAGCCGAGTTTATATAAACAGTTTAAGCCAGCCTTCTTAGGGCGCATGAGAGTTG
TGCCATATTTCCCATTGCATGATGATTTATTGGTTCGAATTATTAAACATAAATTGGGCAAAATTACTGCTCGAATTGAA
AAACAATATGGAACGGAAGTTCAATATTCAGATGACTTGGTTGAATTGCTACTCAGCCGTTGTACTGAAGTGGATAGTGG
CGCCCGTAATGTTGATAACATCTTAAATTCTACAGTTTTACCTGCTTTGGCAACTGAAATTTTAGTGGCGTTGGCAGATC
AAAAATTGCCGAAATTGATCATGATTGATGCAAAAGATGACGAGATCCAATATTTACTAGATCCTGTGGCGAAGCCTGCT
AAAAAACGGACTAGTAAAAAGTTGAAATCAGAAGTTTAA