Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS01000  |
| T6SS type | Type i4b |
| Strain | Acinetobacter baumannii ATCC 17978 |
| Replicon (GenBank) | chromosome (CP000521) |
| Location | 1511966..1539140 |
| Function | - |
| Comment | - |
| References | - |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssI | TssK | TssL | TssM |
| Number | 1 | 2 | 1 | 1 | 1 | 2 | 1 | 1 | 2 | 1 | 1 | 2 |
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Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| A1S_0001 | 95..1492 | + | 1398 | ABO10498.2 | DNA replication initiator protein | ||
| A1S_0002 | 1590..2738 | + | 1149 | ABO10499.2 | DNA polymerase III | ||
| A1S_0003 | 2753..3835 | + | 1083 | ABO10500.2 | DNA replication recombination and repair protein | ||
| A1S_0004 | 3888..6356 | + | 2469 | ABO10501.2 | DNA gyrase | ||
| A1S_0005 | 6397..6786 | + | 390 | ABO10502.2 | putative Cytochrome b precursor | ||
| A1S_0006 | 6872..7429 | - | 558 | ABO10503.2 | putative DedA family protein | ||
| A1S_0007 | 7680..9611 | - | 1932 | ABO10504.2 | putative transport protein | ||
| A1S_0008 | 9868..10872 | + | 1005 | ABO10505.2 | putative RND type efflux pump | ||
| A1S_0009 | 11128..12135 | + | 1008 | ABO10506.2 | putative RND type efflux pump | ||
| A1S_0010 | 12478..13482 | + | 1005 | ABO10507.2 | RND type efflux pump |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|---|
| EFF00255 | A1S_1296 | - | - | Acinetobacter baumannii ATCC 17978 | chromosome (NC_009085) | 1521756..1522259 (+) | 126641342 |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|
| No matching records found | ||||||
Experimental investigation has been performed.
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Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||