Detailed information of component protein


Summary

Component ID T6CP012987
Component protein type TssM
T6SS ID (Type) T6SS01000 insolico (Type i4b)
Strain Acinetobacter baumannii ATCC 17978
Replicon chromosome
Sequence Protein sequence (1042 a.a.); Nucleotide sequence (3126 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) A1S_1302
Coordinate (Strand) 1527124..1530249 (+)
NCBI ID ABO11730.1
GenBank CP000521
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related PF06761.14 4.9e-82 469..810
IcmF-related_N PF14331.8 5.5e-79 161..417
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 1042 a.a.    

>T6CP012987 CP000521:1527124-1530249 [Acinetobacter baumannii ATCC 17978] [TssM]
MSSYTSIPRHIFWDLASAYALGLIAYGIYWLIQRKKHAVQGEELAQAIEKDTQAEYGKNKDKEELQLISQQMKESIQLIR
KSKLGDKKGNAALYELPWYMVIGNPAAGKSSAIYNSGLKFPFEETHQKMVSAGLSGTRNCDWFFSTEGILLDTAGRYSVY
SEDHSEWLGFLNILKKNRSKAPVNGLILIVSIAELVSQSPEHSLKLAKNLRARIQDLTERLEVVVPVYLVFSKMDLIAGF
TEFFEFYEAQEYNQAWGATLPYEQNSSHNAVDLFEKHYNILYDGLKGVSSTHLSRRHSQNISPSVMTFPLEFKTLKPALK
SFIATLFEDNPYQFQPVFRGFYFTSALQEGVIESPMTEQIAQEFQLSQIAQSEVKDQLKTTPNHGYFLKGLFSDVILKDK
DLVKQHVNTSKKRQRYIAFIGALAGVSIILGVWVWSYRNNQQLIAEVQADLNKVVQLEKSSGQQLSTQLEALLVLQRRLQ
QLDEFDENRPLKFSFGLYQGNELREKLKAEYLKGVKQIVLIPTQQNIAQYLQRVKNNEATLKANHTNVEIKQTAQTQQYL
EPSDTNPQDAYNALKAYLMMSNPQYMDASHLSDQVTRFWRSWLDANKGQMPRADMIQEAEQILSYAMTLANDKQFPILDA
DSQLVDQTRQVLLSVIRGMPARDRVYNQIKMRAAVRFPALTVSQIVGDANKNIVLGSYALPGVFTQKAWNEYVEKAMEEA
ADKPTDTKDWVLNSRQSDDLTFSGSPEQIRKQLTALYKQEYIAEWRKFLSGIHYAKATQFAQQVKNIDVLGEPQNSPIRT
LIERVAIETNWDNPVVQAELAAPQKGFIAWFKRKVLNHDDKQLANQAVTNAQGPISQEYQMFYQLVRKRDDQQGKSLLDE
YMTNLALVRSKFNELKNAGEIGPNAMTLVKQTLNEQTSVFNQTQKIVDEKMAVGFSEIDQQLLQKLVVSPLTQAFESLIT
PTQDEINKLWVMQAYQPFTANLAKKYPFNSSASLQATSSEIGQILGENGSISRFVKESLDPFVIRRGYTLTSKHGKIWGL
V*

  Nucleotide sequence: 3126 bp    

>T6CP012987 CP000521:1527124-1530249 [Acinetobacter baumannii ATCC 17978] [TssM]
ATGTCTTCCTATACTTCAATTCCTCGCCATATATTTTGGGATTTAGCATCTGCATATGCTTTAGGGCTCATCGCTTATGG
AATTTATTGGCTAATTCAGCGTAAAAAGCATGCTGTTCAAGGTGAAGAGCTTGCGCAAGCGATTGAAAAGGATACCCAAG
CAGAGTACGGCAAAAATAAAGATAAAGAAGAGCTGCAACTTATTAGCCAACAAATGAAAGAATCTATTCAATTGATTCGT
AAGTCAAAGTTAGGCGATAAAAAGGGGAACGCAGCACTATATGAGTTGCCATGGTATATGGTCATTGGTAACCCGGCTGC
TGGTAAAAGTTCTGCGATCTATAATTCCGGTTTAAAGTTTCCTTTTGAAGAAACCCATCAAAAAATGGTTTCGGCTGGTT
TAAGCGGTACGCGTAATTGTGACTGGTTTTTTTCAACTGAGGGTATTTTACTCGACACCGCTGGACGTTATTCAGTCTAT
AGCGAAGATCACTCTGAATGGTTAGGCTTTTTAAATATCTTAAAGAAGAACCGTTCGAAGGCTCCAGTAAATGGTTTAAT
TCTTATTGTTAGTATTGCTGAGCTTGTTAGTCAGAGTCCAGAACACTCATTAAAGCTTGCGAAAAATTTACGCGCTCGTA
TTCAGGATTTAACTGAACGTTTAGAAGTGGTTGTACCCGTATATCTAGTCTTTTCAAAAATGGATTTGATCGCGGGTTTT
ACTGAATTTTTCGAATTCTATGAAGCACAAGAATATAATCAGGCGTGGGGTGCAACACTACCATATGAGCAAAACTCTTC
TCATAATGCTGTAGATCTTTTTGAGAAACACTACAATATTCTTTATGACGGTTTAAAAGGGGTCAGTTCAACTCATCTTA
GCCGTCGACATTCTCAAAATATCTCACCTAGTGTGATGACTTTCCCATTAGAATTTAAGACATTAAAACCTGCATTAAAA
AGTTTTATTGCGACACTGTTTGAAGATAACCCTTACCAGTTCCAACCAGTTTTCCGTGGGTTTTATTTCACGAGTGCTTT
GCAAGAAGGCGTAATAGAAAGTCCAATGACTGAGCAAATTGCACAGGAATTCCAGCTTTCCCAAATTGCTCAAAGTGAAG
TAAAAGATCAACTAAAAACAACGCCTAACCATGGTTATTTCTTAAAAGGCTTGTTTTCAGATGTCATTTTAAAAGATAAA
GATCTGGTTAAACAGCATGTCAATACAAGCAAAAAGCGTCAGCGTTATATTGCATTTATTGGTGCTTTAGCTGGCGTATC
CATTATTCTAGGTGTGTGGGTTTGGTCATATCGTAACAATCAACAACTTATTGCTGAAGTTCAAGCTGATTTAAATAAAG
TTGTTCAATTGGAAAAGAGTTCAGGTCAACAATTGTCGACTCAATTAGAGGCCTTACTTGTCTTGCAAAGACGTCTACAA
CAGTTAGACGAATTTGATGAAAATAGACCACTAAAATTTAGTTTTGGTTTATATCAAGGTAATGAGCTACGTGAAAAATT
AAAAGCTGAATATTTAAAAGGTGTTAAGCAAATTGTTTTGATACCTACACAGCAAAATATTGCTCAGTATTTGCAACGTG
TAAAAAATAACGAAGCAACTTTAAAAGCAAATCATACCAATGTTGAGATCAAGCAAACTGCTCAAACTCAGCAATATTTA
GAGCCTTCGGATACCAACCCTCAAGATGCTTATAATGCTTTAAAAGCATATTTAATGATGAGCAATCCACAGTATATGGA
TGCAAGTCACTTAAGTGATCAGGTAACGCGTTTCTGGCGTTCTTGGCTTGATGCCAATAAAGGGCAGATGCCACGTGCAG
ATATGATCCAAGAAGCTGAGCAGATCTTATCTTATGCAATGACATTGGCAAATGATAAACAATTCCCGATCTTGGATGCT
GACTCTCAACTCGTGGATCAGACACGTCAAGTATTGCTCTCTGTTATTAGAGGTATGCCAGCACGTGACCGTGTTTATAA
TCAAATTAAAATGCGTGCTGCTGTGCGCTTTCCAGCTTTAACTGTAAGCCAGATTGTAGGTGATGCAAATAAAAATATTG
TATTGGGTAGTTATGCATTACCAGGGGTATTTACTCAAAAAGCTTGGAACGAGTATGTAGAAAAAGCAATGGAGGAAGCA
GCAGACAAACCTACGGATACTAAAGACTGGGTGCTTAATAGCCGTCAATCTGATGATTTAACTTTTTCTGGTAGTCCAGA
GCAAATCAGAAAGCAGCTTACTGCATTGTATAAACAAGAATATATTGCAGAGTGGAGAAAATTCTTAAGTGGTATTCACT
ATGCAAAAGCAACTCAGTTTGCTCAGCAAGTTAAAAATATTGATGTATTGGGCGAACCACAAAATTCACCAATTCGCACA
CTTATTGAACGCGTAGCCATTGAAACAAATTGGGATAATCCGGTCGTTCAAGCCGAGTTAGCAGCACCTCAAAAAGGATT
TATTGCATGGTTTAAACGTAAGGTTTTAAACCATGATGATAAACAATTAGCAAATCAGGCTGTAACGAATGCTCAAGGGC
CTATTTCTCAAGAATATCAAATGTTCTATCAATTGGTTCGTAAACGTGATGATCAGCAAGGTAAATCTTTGCTTGATGAA
TATATGACGAATCTTGCCTTAGTACGTAGTAAGTTTAATGAACTTAAGAATGCGGGTGAGATCGGACCGAATGCGATGAC
ATTGGTTAAGCAAACTTTAAATGAGCAGACATCGGTATTTAACCAGACTCAAAAAATTGTAGATGAAAAGATGGCGGTTG
GTTTCAGTGAAATTGATCAGCAACTTCTACAAAAATTAGTGGTGAGTCCACTTACCCAAGCCTTTGAAAGTTTAATTACA
CCTACTCAAGATGAAATTAATAAGCTATGGGTAATGCAAGCCTATCAACCATTTACTGCAAATCTTGCTAAGAAATATCC
ATTTAACTCATCAGCTTCTTTACAAGCAACAAGTAGTGAAATTGGACAAATTCTTGGTGAAAACGGCAGTATTTCCCGTT
TTGTTAAAGAGAGTTTAGATCCGTTTGTTATCCGCCGTGGTTATACTTTAACTTCAAAACATGGAAAGATTTGGGGATTA
GTTTAA