Detailed information of component protein
Summary
| Component ID | T6CP012984 |
| Component protein type | TssF |
| T6SS ID (Type) | T6SS01000  (Type i4b) |
| Strain | Acinetobacter baumannii ATCC 17978 |
| Replicon | chromosome |
| Sequence | Protein sequence (186 a.a.); Nucleotide sequence (558 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | A1S_1298 |
| Coordinate (Strand) | 1523066..1523623 (+) |
| NCBI ID | ABO11726.1 |
| GenBank | CP000521 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_TssF | PF05947.14 | 1.7e-36 | 1..177 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 186 a.a.
>T6CP012984 CP000521:1523066-1523623 [Acinetobacter baumannii ATCC 17978] [TssF]
MFPQYLRHFPACSVVSFEDINKIKQLKEPHLVPHHTVLKSRSFKGVQCEFNTTQDVKLLPIHLSGLDFKTTPSAHMHLNQ
NATLSLKFEIFNNAHACLTDEKLPIYLDAISNFPLQVLDSIFKKGTSFAVKYGQTIVELSKNPFELIGFAEQESLLPLDQ
HTHHAYRLLMEYFCFPESLVILSSI*
MFPQYLRHFPACSVVSFEDINKIKQLKEPHLVPHHTVLKSRSFKGVQCEFNTTQDVKLLPIHLSGLDFKTTPSAHMHLNQ
NATLSLKFEIFNNAHACLTDEKLPIYLDAISNFPLQVLDSIFKKGTSFAVKYGQTIVELSKNPFELIGFAEQESLLPLDQ
HTHHAYRLLMEYFCFPESLVILSSI*
Nucleotide sequence: 558 bp
>T6CP012984 CP000521:1523066-1523623 [Acinetobacter baumannii ATCC 17978] [TssF]
ATGTTCCCTCAATACTTACGACATTTTCCTGCGTGTTCAGTTGTTAGCTTTGAAGATATTAATAAGATTAAACAGCTTAA
AGAACCTCATCTTGTACCTCATCATACGGTTTTGAAATCTCGTAGTTTCAAAGGAGTACAGTGTGAGTTTAATACAACTC
AAGATGTTAAATTACTGCCTATTCATTTAAGTGGTTTAGATTTTAAAACTACACCTAGTGCACATATGCACTTAAATCAA
AATGCGACGTTGAGCCTTAAATTTGAAATTTTTAATAATGCTCATGCTTGTTTAACTGATGAGAAGCTTCCTATTTATTT
GGATGCTATCTCTAATTTTCCTCTACAGGTCCTTGATAGTATTTTCAAAAAAGGAACCAGTTTTGCGGTTAAATATGGAC
AAACAATTGTAGAATTGAGCAAGAATCCATTCGAATTGATTGGTTTTGCAGAACAAGAAAGTTTATTACCGCTTGATCAA
CATACCCATCATGCTTATCGTTTGTTGATGGAATACTTTTGTTTCCCGGAAAGTTTAGTTATCTTAAGCTCGATTTAG
ATGTTCCCTCAATACTTACGACATTTTCCTGCGTGTTCAGTTGTTAGCTTTGAAGATATTAATAAGATTAAACAGCTTAA
AGAACCTCATCTTGTACCTCATCATACGGTTTTGAAATCTCGTAGTTTCAAAGGAGTACAGTGTGAGTTTAATACAACTC
AAGATGTTAAATTACTGCCTATTCATTTAAGTGGTTTAGATTTTAAAACTACACCTAGTGCACATATGCACTTAAATCAA
AATGCGACGTTGAGCCTTAAATTTGAAATTTTTAATAATGCTCATGCTTGTTTAACTGATGAGAAGCTTCCTATTTATTT
GGATGCTATCTCTAATTTTCCTCTACAGGTCCTTGATAGTATTTTCAAAAAAGGAACCAGTTTTGCGGTTAAATATGGAC
AAACAATTGTAGAATTGAGCAAGAATCCATTCGAATTGATTGGTTTTGCAGAACAAGAAAGTTTATTACCGCTTGATCAA
CATACCCATCATGCTTATCGTTTGTTGATGGAATACTTTTGTTTCCCGGAAAGTTTAGTTATCTTAAGCTCGATTTAG