Detailed information of component protein


Summary

Component ID T6CP012980
Component protein type TssB
T6SS ID (Type) T6SS01000 insolico (Type i4b)
Strain Acinetobacter baumannii ATCC 17978
Replicon chromosome
Sequence Protein sequence (80 a.a.); Nucleotide sequence (240 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) A1S_1294
Coordinate (Strand) 1519993..1520232 (+)
NCBI ID ABO11722.1
GenBank CP000521
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VipA PF05591.14 9e-25 2..76
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 80 a.a.    

>T6CP012980 CP000521:1519993-1520232 [Acinetobacter baumannii ATCC 17978] [TssB]
MTEEGGKMAVDLTFKSMEDFRPENVVQQVDPLKKLVEARERLTDLRNKISNSERLEDLLDEVLKNTDQIRKLSAEADHE*

  Nucleotide sequence: 240 bp    

>T6CP012980 CP000521:1519993-1520232 [Acinetobacter baumannii ATCC 17978] [TssB]
TTGACAGAAGAAGGCGGTAAAATGGCTGTTGATTTAACATTTAAATCAATGGAAGATTTTCGCCCGGAAAATGTTGTACA
GCAAGTTGATCCATTAAAGAAATTGGTTGAGGCGCGTGAGCGTTTAACCGATTTAAGAAACAAAATTTCAAACAGTGAGC
GTTTAGAAGATCTGCTTGATGAGGTTCTTAAAAATACTGATCAAATCCGTAAATTAAGTGCGGAGGCCGATCATGAATAA