Detailed information of component protein


Summary

Component ID T6CP012978
Component protein type TssI
T6SS ID (Type) T6SS01000 insolico (Type i4b)
Strain Acinetobacter baumannii ATCC 17978
Replicon chromosome
Sequence Protein sequence (396 a.a.); Nucleotide sequence (1188 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) A1S_1289
Coordinate (Strand) 1513051..1514238 (+)
NCBI ID ABO11717.1
GenBank CP000521
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DUF2345 PF10106.11 1.6e-43 167..313
T6SS_Vgr PF13296.8 9.4e-39 34..140
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 396 a.a.    

>T6CP012978 CP000521:1513051-1514238 [Acinetobacter baumannii ATCC 17978] [TssI]
VVGRIHEAERQPTQFDQKGQLPDTKKLSGIRSEEVDGKGFNQLRFDDTTGQISAQLQSSHAASQLNLGNLSHPKDKAESD
GRGEGFELRTDQWGAVRAGSGLLISTHKQDQAQGVHLDASEAKQQIEGGLNNAKALSEVAKNQQTDPLDMLENIQTFLEV
LKQEDPKKAAEFQSAVMLLASPKSIAVSSNEDIHLSANGQLTQSAGDSINMSTQKNIVNHASQKISLFAAQEGARLFAGK
GKVEIQAQGDGLDVIARKGIQITSTEDTVFITSPTEINLTANGSQVKLNGSGIFPVTGGKLEVKAGQHLFMGGEQVTPPK
KQENKPCYLTFEITDLDGKPAKNVEYIAFRMDGSRQKGQTNAQGLTQRFETDGSEQISIHICDENASKYKLAAKG*

  Nucleotide sequence: 1188 bp    

>T6CP012978 CP000521:1513051-1514238 [Acinetobacter baumannii ATCC 17978] [TssI]
GTGGTGGGGCGTATTCATGAAGCCGAGCGCCAACCAACGCAGTTCGACCAGAAAGGCCAGCTACCTGACACCAAGAAACT
TAGCGGTATCCGTTCAGAAGAAGTCGATGGCAAAGGCTTTAACCAGCTCCGTTTTGATGACACCACAGGCCAAATCAGTG
CCCAGTTACAAAGTAGCCATGCCGCAAGCCAGCTAAACTTGGGTAACTTAAGCCATCCAAAAGACAAGGCGGAAAGCGAT
GGTCGTGGGGAAGGTTTTGAACTCAGAACTGACCAGTGGGGCGCGGTTCGAGCAGGCAGTGGCTTACTCATTAGTACCCA
CAAACAGGATCAGGCTCAAGGTGTACATCTTGATGCAAGCGAGGCTAAGCAACAAATCGAAGGCGGCCTCAATAATGCCA
AGGCACTCAGTGAAGTTGCTAAAAATCAGCAAACTGACCCGTTAGATATGCTTGAGAATATTCAGACTTTTTTAGAAGTT
CTCAAACAAGAAGATCCTAAAAAAGCTGCTGAATTTCAATCAGCAGTGATGCTGCTGGCATCACCAAAAAGTATTGCTGT
AAGTAGTAATGAAGATATACACCTCAGTGCAAATGGTCAGCTCACTCAAAGTGCTGGAGATAGCATTAATATGAGTACGC
AAAAGAATATAGTGAATCATGCGAGCCAAAAGATTAGTCTCTTTGCCGCTCAGGAGGGTGCTCGACTTTTTGCTGGGAAG
GGCAAAGTAGAAATTCAAGCTCAAGGTGATGGCTTAGATGTCATTGCTCGAAAAGGTATACAGATTACTTCAACCGAAGA
CACAGTTTTTATTACTAGCCCAACTGAGATTAATCTGACAGCAAACGGATCTCAAGTTAAGCTGAACGGTTCAGGTATTT
TCCCTGTCACGGGTGGTAAGCTTGAGGTGAAGGCTGGGCAGCACTTGTTTATGGGGGGAGAACAAGTTACTCCTCCTAAA
AAGCAGGAAAATAAACCTTGTTATTTGACTTTTGAAATTACTGATTTAGATGGAAAGCCAGCGAAAAATGTAGAGTATAT
TGCTTTTAGAATGGATGGTAGCCGGCAAAAGGGACAAACTAATGCCCAAGGTTTAACTCAAAGATTTGAAACTGATGGCT
CAGAACAAATTTCCATTCATATTTGTGATGAAAATGCTTCTAAATATAAACTAGCGGCAAAAGGTTAA