Detailed information of component protein
Summary
| Component ID | T6CP012977 |
| Component protein type | TssI |
| T6SS ID (Type) | T6SS01000  (Type i4b) |
| Strain | Acinetobacter baumannii ATCC 17978 |
| Replicon | chromosome |
| Sequence | Protein sequence (427 a.a.); Nucleotide sequence (1281 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | A1S_1288 |
| Coordinate (Strand) | 1511966..1513246 (+) |
| NCBI ID | ABO11716.1 |
| GenBank | CP000521 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| Phage_GPD | PF05954.13 | 3.2e-31 | 1..215 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 427 a.a.
>T6CP012977 CP000521:1511966-1513246 [Acinetobacter baumannii ATCC 17978] [TssI]
MQSNESDYDFLTRLWRSEGINWLVDESQLFVADPNASIQPQVLRLIDDNQNYQALERRSIRYQRSSATEQFDTITQVKAE
RRLQPTSVHVQRWQADALQQEEGSGSVQGTQKHSEHYDNASLNLEDAWHVSPAWMQDLNGKDQATASGNSQIEQLNQHIN
AYHHLSSKQFTVAGNVRDAQVGYWFELNDHPELDQHDSADKEFLILSKHYYNQNNLPKELQQQLERLLPQGKLKAAQLDS
QNPEQRHFAELNVVRRNIKAVPEYNPLEHRPAAHPQRARVVGLEGESIHVDQWGRIKVRFLLPELMTTAMMVELEVTTMT
PTRLGSMYSLLGQGQVMAHVSCHVLVKLLSSISLTVMLTARLWWGVFMKPSANQRSSTRKASYLTPRNLAVSVQKKSMAK
ALTSSVLMTPQAKSVPSYKVAMPQAS*
MQSNESDYDFLTRLWRSEGINWLVDESQLFVADPNASIQPQVLRLIDDNQNYQALERRSIRYQRSSATEQFDTITQVKAE
RRLQPTSVHVQRWQADALQQEEGSGSVQGTQKHSEHYDNASLNLEDAWHVSPAWMQDLNGKDQATASGNSQIEQLNQHIN
AYHHLSSKQFTVAGNVRDAQVGYWFELNDHPELDQHDSADKEFLILSKHYYNQNNLPKELQQQLERLLPQGKLKAAQLDS
QNPEQRHFAELNVVRRNIKAVPEYNPLEHRPAAHPQRARVVGLEGESIHVDQWGRIKVRFLLPELMTTAMMVELEVTTMT
PTRLGSMYSLLGQGQVMAHVSCHVLVKLLSSISLTVMLTARLWWGVFMKPSANQRSSTRKASYLTPRNLAVSVQKKSMAK
ALTSSVLMTPQAKSVPSYKVAMPQAS*
Nucleotide sequence: 1281 bp
>T6CP012977 CP000521:1511966-1513246 [Acinetobacter baumannii ATCC 17978] [TssI]
ATGCAGTCAAATGAAAGCGATTATGACTTTTTAACCCGTTTGTGGCGTAGTGAAGGTATTAACTGGCTGGTCGATGAGTC
ACAGCTTTTTGTCGCTGACCCAAATGCTTCTATCCAGCCACAAGTACTGCGTTTAATTGACGATAACCAAAATTATCAGG
CACTTGAACGCCGTAGCATCCGCTATCAACGCAGCAGTGCGACAGAGCAGTTCGATACGATTACCCAAGTCAAAGCTGAG
CGTCGTTTACAACCAACCTCGGTTCATGTGCAACGCTGGCAAGCCGATGCTTTGCAACAAGAAGAAGGTAGCGGCAGCGT
ACAAGGCACCCAAAAGCACAGCGAACACTATGACAATGCCAGCCTGAACCTTGAAGATGCATGGCATGTTAGCCCAGCGT
GGATGCAGGATTTAAACGGGAAAGATCAAGCCACAGCTTCGGGAAATAGCCAGATTGAACAACTTAACCAGCACATCAAT
GCTTACCATCACCTGAGTTCTAAACAGTTTACCGTTGCAGGTAACGTCCGTGATGCACAAGTGGGTTACTGGTTTGAGCT
GAATGACCATCCGGAACTTGACCAACATGATAGTGCTGATAAAGAGTTCTTAATCTTAAGCAAACACTACTATAACCAGA
ATAATTTACCGAAAGAATTACAACAACAACTTGAGCGCCTATTACCACAAGGCAAACTCAAGGCAGCCCAACTCGACAGC
CAAAACCCTGAGCAGCGCCACTTTGCTGAGCTGAATGTCGTTCGTCGTAATATTAAAGCTGTGCCTGAATATAACCCGTT
AGAGCACCGACCAGCCGCTCACCCACAGCGCGCTAGAGTGGTGGGTTTAGAGGGTGAAAGCATTCATGTCGACCAGTGGG
GACGCATTAAAGTCCGTTTCCTTTTACCCGAGCTGATGACCACAGCCATGATGGTGGAGCTGGAAGTAACGACAATGACA
CCGACTCGGCTTGGGTCGATGTACTCACTCCTTGGGCAGGGGCAGGTTATGGCGCACGTTTCTTGCCACGTGTTGGTGAA
ATTGTTGTCATCGATTTCTTTGACGGTAATGTTGACCGCCCGTTTGTGGTGGGGCGTATTCATGAAGCCGAGCGCCAACC
AACGCAGTTCGACCAGAAAGGCCAGCTACCTGACACCAAGAAACTTAGCGGTATCCGTTCAGAAGAAGTCGATGGCAAAG
GCTTTAACCAGCTCCGTTTTGATGACACCACAGGCCAAATCAGTGCCCAGTTACAAAGTAGCCATGCCGCAAGCCAGCTA
A
ATGCAGTCAAATGAAAGCGATTATGACTTTTTAACCCGTTTGTGGCGTAGTGAAGGTATTAACTGGCTGGTCGATGAGTC
ACAGCTTTTTGTCGCTGACCCAAATGCTTCTATCCAGCCACAAGTACTGCGTTTAATTGACGATAACCAAAATTATCAGG
CACTTGAACGCCGTAGCATCCGCTATCAACGCAGCAGTGCGACAGAGCAGTTCGATACGATTACCCAAGTCAAAGCTGAG
CGTCGTTTACAACCAACCTCGGTTCATGTGCAACGCTGGCAAGCCGATGCTTTGCAACAAGAAGAAGGTAGCGGCAGCGT
ACAAGGCACCCAAAAGCACAGCGAACACTATGACAATGCCAGCCTGAACCTTGAAGATGCATGGCATGTTAGCCCAGCGT
GGATGCAGGATTTAAACGGGAAAGATCAAGCCACAGCTTCGGGAAATAGCCAGATTGAACAACTTAACCAGCACATCAAT
GCTTACCATCACCTGAGTTCTAAACAGTTTACCGTTGCAGGTAACGTCCGTGATGCACAAGTGGGTTACTGGTTTGAGCT
GAATGACCATCCGGAACTTGACCAACATGATAGTGCTGATAAAGAGTTCTTAATCTTAAGCAAACACTACTATAACCAGA
ATAATTTACCGAAAGAATTACAACAACAACTTGAGCGCCTATTACCACAAGGCAAACTCAAGGCAGCCCAACTCGACAGC
CAAAACCCTGAGCAGCGCCACTTTGCTGAGCTGAATGTCGTTCGTCGTAATATTAAAGCTGTGCCTGAATATAACCCGTT
AGAGCACCGACCAGCCGCTCACCCACAGCGCGCTAGAGTGGTGGGTTTAGAGGGTGAAAGCATTCATGTCGACCAGTGGG
GACGCATTAAAGTCCGTTTCCTTTTACCCGAGCTGATGACCACAGCCATGATGGTGGAGCTGGAAGTAACGACAATGACA
CCGACTCGGCTTGGGTCGATGTACTCACTCCTTGGGCAGGGGCAGGTTATGGCGCACGTTTCTTGCCACGTGTTGGTGAA
ATTGTTGTCATCGATTTCTTTGACGGTAATGTTGACCGCCCGTTTGTGGTGGGGCGTATTCATGAAGCCGAGCGCCAACC
AACGCAGTTCGACCAGAAAGGCCAGCTACCTGACACCAAGAAACTTAGCGGTATCCGTTCAGAAGAAGTCGATGGCAAAG
GCTTTAACCAGCTCCGTTTTGATGACACCACAGGCCAAATCAGTGCCCAGTTACAAAGTAGCCATGCCGCAAGCCAGCTA
A