Detailed information of component protein


Summary

Component ID T6CP012973
Component protein type TssC
T6SS ID (Type) T6SS00948 experimental (Type i1)
Strain Aeromonas hydrophila NJ-35
Replicon chromosome
Sequence Protein sequence (493 a.a.); Nucleotide sequence (1479 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) U876_13575
Coordinate (Strand) 2965802..2967280 (-)
NCBI ID 827372808
GenBank CP006870
Uniprot ID UPI0005889FAB
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 2.3e-128 66..365
VipB_2 PF18945.2 2.8e-45 378..489
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-492 MSLVEEQVQAGASAASSSLLDEIMAQARITPVDEGYNVAKQGVAALIANILDSGTTSDPVNKALVDSMIVELDKKLSKQMDVILHAKELQEMESSWRSLKLLVDRTDFRENIKIQVLHATKEELLEDFEFSPEITQSGLYKHVYSSGYGQFGGQPVGAVIGDYAFTHSAPDIKLMQYVSAVGAMAHAPFISSVAPSFFGVDSFTDLSSIKDLKSVFEGPAYTKWRALRESEDARYLGLTAPRFLARLPYDPTENPIKGFNYQEDISSDHDHYLWGNTAYLMGTSLTDSFAKYRWCPNIIGPQSGGAIHDLPVHVYEAMGQLQAKIPTEVLITDRREYELSEEGFITLTMRKDSDNAAFFSANSVQKPKVFPNTKEGREAETNYKLGTQLPYMFIINRLAHYIKVLQREQIGSWKERQDLERELNSWIRQFVADQENPPAEVRSRRPLRAAQIKVLDVEGEPGWYQVAMAVRPHFKYMGASFELSLVGRLDKE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9521 - -


  Protein sequence: 493 a.a.    

>T6CP012973 CP006870:c2967280-2965802 [Aeromonas hydrophila NJ-35] [TssC]
MSLVEEQVQAGASAASSSLLDEIMAQARITPVDEGYNVAKQGVAALIANILDSGTTSDPVNKALVDSMIVELDKKLSKQM
DVILHAKELQEMESSWRSLKLLVDRTDFRENIKIQVLHATKEELLEDFEFSPEITQSGLYKHVYSSGYGQFGGQPVGAVI
GDYAFTHSAPDIKLMQYVSAVGAMAHAPFISSVAPSFFGVDSFTDLSSIKDLKSVFEGPAYTKWRALRESEDARYLGLTA
PRFLARLPYDPTENPIKGFNYQEDISSDHDHYLWGNTAYLMGTSLTDSFAKYRWCPNIIGPQSGGAIHDLPVHVYEAMGQ
LQAKIPTEVLITDRREYELSEEGFITLTMRKDSDNAAFFSANSVQKPKVFPNTKEGREAETNYKLGTQLPYMFIINRLAH
YIKVLQREQIGSWKERQDLERELNSWIRQFVADQENPPAEVRSRRPLRAAQIKVLDVEGEPGWYQVAMAVRPHFKYMGAS
FELSLVGRLDKE*

  Nucleotide sequence: 1479 bp    

>T6CP012973 CP006870:c2967280-2965802 [Aeromonas hydrophila NJ-35] [TssC]
ATGTCTTTGGTCGAAGAACAGGTTCAAGCGGGGGCGAGTGCTGCCTCCTCGTCCTTGCTGGACGAAATCATGGCGCAGGC
CCGCATTACCCCGGTGGATGAGGGCTACAACGTCGCCAAGCAGGGCGTTGCAGCCCTGATCGCCAACATTCTGGACAGCG
GCACTACCAGCGATCCGGTCAACAAGGCGCTGGTGGACAGCATGATTGTCGAGCTCGACAAGAAGCTGAGCAAGCAGATG
GACGTCATCCTGCACGCCAAGGAGCTGCAGGAGATGGAGTCCTCCTGGCGCTCCCTGAAGCTCTTGGTGGATCGCACCGA
TTTTCGCGAGAACATCAAGATCCAGGTGCTGCATGCCACCAAGGAAGAGCTGCTGGAAGATTTCGAGTTCTCACCCGAAA
TCACCCAGTCCGGCCTCTACAAGCATGTCTATTCCAGCGGTTATGGTCAGTTTGGTGGCCAGCCGGTGGGGGCCGTGATC
GGTGATTACGCCTTCACCCACAGCGCACCCGACATCAAGCTGATGCAATACGTCAGTGCGGTGGGGGCCATGGCCCATGC
GCCGTTCATCTCCTCTGTGGCGCCATCCTTCTTTGGCGTCGACAGCTTTACCGACCTGTCCTCCATCAAGGATCTCAAAT
CGGTATTCGAAGGGCCGGCCTACACCAAGTGGCGCGCCTTGCGTGAATCGGAAGATGCCCGTTATCTGGGGTTGACGGCA
CCGCGCTTCCTGGCGCGTCTGCCCTACGACCCGACCGAAAACCCCATCAAGGGCTTCAATTATCAGGAAGACATCAGCTC
GGACCACGATCACTACCTGTGGGGCAACACCGCCTACCTGATGGGGACTTCCCTGACCGACAGCTTCGCCAAGTATCGCT
GGTGCCCGAACATCATAGGCCCGCAGAGTGGTGGCGCCATCCACGACCTGCCGGTGCACGTCTACGAGGCCATGGGTCAG
CTGCAAGCGAAGATCCCGACCGAGGTGCTGATCACCGACCGTCGCGAGTACGAGCTCTCGGAAGAGGGTTTCATCACCCT
GACCATGCGCAAGGACAGCGACAACGCCGCCTTCTTCTCCGCCAACTCGGTACAAAAACCCAAGGTGTTCCCGAACACCA
AGGAAGGCCGGGAGGCCGAGACCAACTACAAGCTGGGTACCCAGCTGCCCTACATGTTCATCATCAACCGCCTGGCGCAC
TACATCAAAGTGCTGCAGCGTGAGCAGATCGGCTCCTGGAAGGAGCGTCAGGATCTGGAGCGTGAGCTGAACAGCTGGAT
CCGGCAGTTTGTCGCAGACCAGGAAAACCCGCCGGCAGAGGTCCGCAGCCGCCGTCCGCTGCGCGCTGCCCAGATCAAGG
TGCTGGATGTGGAGGGGGAGCCGGGCTGGTATCAGGTCGCCATGGCCGTGCGTCCGCACTTCAAGTACATGGGGGCGAGC
TTCGAGCTCTCTCTGGTAGGTCGTCTGGACAAGGAATAA