Detailed information of component protein


Summary

Component ID T6CP012968
Component protein type TssK
T6SS ID (Type) T6SS00948 experimental (Type i1)
Strain Aeromonas hydrophila NJ-35
Replicon chromosome
Sequence Protein sequence (445 a.a.); Nucleotide sequence (1335 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) U876_13545
Coordinate (Strand) 2959473..2960807 (-)
NCBI ID 827372802
GenBank CP006870
Uniprot ID UPI00044BCE96
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 1.2e-157 19..441
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-444 MSSRNRVIWREGLFIKPQHFQQQQRHSDYALHARLSALSDYFYGLQSLAINEDYLGFGRIALVGATGILPDGTVFNIPNDDVLPTPLEVTDASVANQKVYLALPLSVSGVNEVNQGGQVATRLQAHRHDVRDLHSEGGDVVSLEVGRVSLRLMLEREDRSAYASLAIARILDKRPDGGLVLDPNFMPCSISVSAIPTLKRFLGESAGLVAERARSLSQRIAAPGQQGVADVAEFMMLQLLNRAQPQLSHLARLGTLHPERLHEALVQLCGELMTFTDESRLPPEFPAYRHDDQQVSFEPVMLALRQALSTVLSPRAVSIQLRKHQYGIMVAMVNESELMTSADFVLAVRARMPQEQLRKQLLQQTKVASSDKIRELISLQLPGIPLLPLPVAPRQLPYHAGYSYFQLDRQSPAWQMLAVGNTLAFHIAGDFPELDMQLWAIRSQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9891 - -


  Protein sequence: 445 a.a.    

>T6CP012968 CP006870:c2960807-2959473 [Aeromonas hydrophila NJ-35] [TssK]
MSSRNRVIWREGLFIKPQHFQQQQRHSDYALHARLSALSDYFYGLQSLAINEDYLGFGRIALVGATGILPDGTVFNIPND
DVLPTPLEVTDASVANQKVYLALPLSVSGVNEVNQGGQVATRLQAHRHDVRDLHSEGGDVVSLEVGRVSLRLMLEREDRS
AYASLAIARILDKRPDGGLVLDPNFMPCSISVSAIPTLKRFLGESAGLVAERARSLSQRIAAPGQQGVADVAEFMMLQLL
NRAQPQLSHLARLGTLHPERLHEALVQLCGELMTFTDESRLPPEFPAYRHDDQQVSFEPVMLALRQALSTVLSPRAVSIQ
LRKHQYGIMVAMVNESELMTSADFVLAVRARMPQEQLRKQLLQQTKVASSDKIRELISLQLPGIPLLPLPVAPRQLPYHA
GYSYFQLDRQSPAWQMLAVGNTLAFHIAGDFPELDMQLWAIRSQ*

  Nucleotide sequence: 1335 bp    

>T6CP012968 CP006870:c2960807-2959473 [Aeromonas hydrophila NJ-35] [TssK]
ATGTCGAGTCGAAATCGGGTTATCTGGCGTGAGGGGTTGTTCATCAAGCCCCAGCACTTCCAGCAACAACAAAGACATTC
GGATTACGCGCTGCACGCTCGCCTGAGCGCGCTGTCCGACTATTTCTATGGCTTGCAGTCGCTCGCCATCAACGAGGATT
ACCTGGGCTTTGGCCGCATCGCCCTGGTGGGGGCCACCGGCATCCTGCCGGACGGTACCGTGTTCAACATCCCCAATGAC
GATGTGCTGCCGACCCCGCTGGAAGTCACCGACGCCTCGGTGGCCAACCAGAAGGTCTATCTGGCGCTGCCGCTCTCAGT
GAGCGGTGTCAACGAGGTCAATCAGGGCGGCCAGGTGGCTACCCGGTTGCAGGCCCATCGCCATGACGTGCGCGATTTGC
ACAGCGAAGGGGGGGATGTGGTCTCCCTCGAAGTGGGGCGGGTCAGCCTGCGGCTGATGCTGGAGCGCGAGGATCGCAGT
GCTTATGCATCATTGGCCATCGCCCGCATTCTGGACAAGCGCCCGGACGGCGGCCTGGTGCTGGATCCCAACTTCATGCC
CTGCAGCATCAGCGTCTCCGCCATCCCGACCCTCAAGCGCTTCCTCGGCGAGTCGGCCGGGTTGGTCGCCGAGCGGGCCC
GTAGTCTCTCCCAGCGCATCGCCGCGCCGGGTCAGCAGGGAGTGGCCGACGTGGCCGAGTTCATGATGCTGCAACTGCTC
AACCGGGCCCAGCCCCAGCTCTCCCATCTGGCGCGCCTTGGCACTCTGCACCCCGAGCGGTTGCACGAGGCGCTGGTGCA
GCTGTGTGGCGAGCTGATGACCTTTACCGACGAGTCCCGCCTGCCGCCCGAGTTCCCCGCCTATCGCCACGACGATCAGC
AGGTGAGCTTCGAGCCGGTGATGCTGGCCCTGCGCCAGGCGCTCAGTACCGTGCTGTCGCCGCGCGCCGTCTCCATCCAG
CTGCGCAAGCACCAGTACGGCATCATGGTCGCCATGGTCAACGAGAGCGAGCTGATGACCAGCGCCGACTTCGTGCTGGC
GGTGCGTGCCCGCATGCCGCAGGAGCAGCTGCGCAAGCAGTTGCTGCAGCAGACCAAGGTGGCCTCCAGCGACAAGATCC
GCGAGCTCATCAGCCTGCAGCTGCCCGGCATTCCGCTGCTGCCGCTGCCGGTGGCGCCGCGCCAGCTGCCCTATCACGCC
GGTTACAGCTACTTCCAGCTCGACCGGCAGAGCCCGGCCTGGCAGATGCTGGCGGTGGGCAACACCCTTGCCTTCCACAT
CGCCGGCGACTTCCCCGAGCTCGACATGCAGCTCTGGGCCATTCGCAGCCAGTGA