Detailed information of component protein


Summary

Component ID T6CP012966
Component protein type TssH
T6SS ID (Type) T6SS00948 experimental (Type i1)
Strain Aeromonas hydrophila NJ-35
Replicon chromosome
Sequence Protein sequence (881 a.a.); Nucleotide sequence (2643 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) U876_13535
Coordinate (Strand) 2956008..2958650 (-)
NCBI ID 827372800
GenBank CP006870
Uniprot ID UPI000588CF39
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 6.7e-37 617..778
AAA_lid_9 PF17871.3 2.7e-29 362..453
ClpB_D2-small PF10431.11 3.1e-10 784..858
AAA PF00004.31 5.8e-08 222..317
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-880 MIRIELPVLVERLNPICRHMLEEAAALCVNHQGAEIRIEHLLLKMLETPLSDVRQILKVAEVEVEELKTLLQPSAADSNYGQGYPSFSPMLVEWLQDSWLLASAELQHAQLRSGVMLLVLLMTPQRYLPGSVTRLLAKVNRELLRQQFDEWVKESAETQVTTAPGGKTAQAALPADASLLARFTVNVTEQARQGSLDPVLCRDHEIDLMIDILSRRRKNNPIVVGEAGVGKSALIEGLALRMVAGQVPEKLRGVELMTLDLGAMQAGASVKGEFEKRFKGVMQEVKDAVQPVILFIDEAHTLIGAGNQAGGLDVSNLIKPALARGELRTIAATTWGEYKKYVEKDAALSRRFQLVKVGEPDADEATVILRGLRSIYEKAHGVLIDEEALQAAAQLSARYISGRQLPDKAIDVLDTACARVAINLTTPPRAVSHLQNALRQRELEIRQLERQSLIGLGDNAERLAELQGAQQACREELAEQEARWQQQQGLVHQIVELRAALLADQQDEMLAREALDLADAPLDPQAAAEQLATLERELAELQQGEVLVSAHVDKTQIAAVIAEWTGVPLNRISQGELDVVTRLPEYLGELIQGQDVAVAHLHKHLLTARADLRRPGRPLGAFLLVGPSGVGKTETVLQIAELMFGGRQYLTTINMSEYQEKHTVSRLIGSPPGYVGFGEGGVLTEAIRQKPYSVVLLDEVEKAHPDVLNLFYQAFDKGELADGEGRIIDCKNVVFFLTSNLGFQTIVDHAEQPDVLLDALYPELAAFFKPALLARMEVIPYLPLGHDTLVQIVGGKLNRLVKLLKERFGAEVVLDDEVAEEILLRANRSENGARMLESVIDGALLPPVSLQLLQRLSAGEPIKRVHFSVADHQFVAEVGA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9978 - -


  Protein sequence: 881 a.a.    

>T6CP012966 CP006870:c2958650-2956008 [Aeromonas hydrophila NJ-35] [TssH]
MIRIELPVLVERLNPICRHMLEEAAALCVNHQGAEIRIEHLLLKMLETPLSDVRQILKVAEVEVEELKTLLQPSAADSNY
GQGYPSFSPMLVEWLQDSWLLASAELQHAQLRSGVMLLVLLMTPQRYLPGSVTRLLAKVNRELLRQQFDEWVKESAETQV
TTAPGGKTAQAALPADASLLARFTVNVTEQARQGSLDPVLCRDHEIDLMIDILSRRRKNNPIVVGEAGVGKSALIEGLAL
RMVAGQVPEKLRGVELMTLDLGAMQAGASVKGEFEKRFKGVMQEVKDAVQPVILFIDEAHTLIGAGNQAGGLDVSNLIKP
ALARGELRTIAATTWGEYKKYVEKDAALSRRFQLVKVGEPDADEATVILRGLRSIYEKAHGVLIDEEALQAAAQLSARYI
SGRQLPDKAIDVLDTACARVAINLTTPPRAVSHLQNALRQRELEIRQLERQSLIGLGDNAERLAELQGAQQACREELAEQ
EARWQQQQGLVHQIVELRAALLADQQDEMLAREALDLADAPLDPQAAAEQLATLERELAELQQGEVLVSAHVDKTQIAAV
IAEWTGVPLNRISQGELDVVTRLPEYLGELIQGQDVAVAHLHKHLLTARADLRRPGRPLGAFLLVGPSGVGKTETVLQIA
ELMFGGRQYLTTINMSEYQEKHTVSRLIGSPPGYVGFGEGGVLTEAIRQKPYSVVLLDEVEKAHPDVLNLFYQAFDKGEL
ADGEGRIIDCKNVVFFLTSNLGFQTIVDHAEQPDVLLDALYPELAAFFKPALLARMEVIPYLPLGHDTLVQIVGGKLNRL
VKLLKERFGAEVVLDDEVAEEILLRANRSENGARMLESVIDGALLPPVSLQLLQRLSAGEPIKRVHFSVADHQFVAEVGA
*

  Nucleotide sequence: 2643 bp    

>T6CP012966 CP006870:c2958650-2956008 [Aeromonas hydrophila NJ-35] [TssH]
TTGATTCGTATAGAGCTACCGGTACTGGTGGAAAGACTCAACCCCATCTGCCGTCACATGCTGGAAGAGGCTGCGGCCCT
CTGCGTCAACCACCAGGGAGCCGAGATCCGCATCGAGCACCTGCTGCTCAAGATGCTGGAGACCCCGCTGAGCGACGTAC
GCCAGATCCTGAAGGTGGCCGAGGTGGAGGTGGAAGAGCTCAAGACCCTGCTGCAACCGTCCGCAGCCGACAGCAACTAT
GGCCAGGGTTACCCCTCCTTCTCGCCCATGCTGGTGGAGTGGCTGCAAGACAGCTGGCTGCTCGCCTCCGCCGAGCTGCA
ACATGCCCAGCTGCGTAGCGGCGTTATGCTGCTGGTGCTGCTGATGACCCCCCAGCGCTACCTGCCGGGCTCGGTGACCC
GTCTGCTCGCCAAGGTCAATCGCGAGCTGCTGCGCCAGCAGTTCGACGAGTGGGTCAAGGAGTCTGCCGAGACGCAAGTG
ACCACCGCCCCCGGCGGCAAGACGGCCCAGGCCGCCCTGCCGGCCGATGCCAGCCTGCTGGCCCGCTTTACCGTCAACGT
GACCGAACAGGCCCGCCAGGGCAGCTTGGATCCCGTGCTCTGCCGGGATCACGAAATCGATCTGATGATCGACATCCTCT
CCCGTCGTCGCAAGAACAACCCCATCGTGGTGGGGGAGGCCGGGGTCGGCAAGAGTGCCCTCATCGAGGGGCTGGCCCTG
CGCATGGTGGCGGGTCAGGTGCCCGAGAAGCTGCGCGGGGTCGAGCTGATGACCCTGGATCTCGGCGCCATGCAGGCCGG
CGCCTCGGTCAAGGGGGAGTTCGAGAAGCGCTTCAAGGGGGTGATGCAGGAGGTCAAGGACGCCGTGCAACCGGTCATCC
TGTTCATCGACGAGGCGCACACCCTGATCGGGGCCGGCAATCAGGCCGGTGGGCTGGATGTTTCCAACCTCATCAAGCCG
GCGCTGGCTCGGGGCGAGCTGCGCACCATCGCCGCCACCACCTGGGGTGAGTACAAGAAATACGTGGAAAAAGACGCGGC
CCTGTCGCGCCGCTTCCAGCTGGTGAAGGTCGGTGAACCCGATGCCGACGAGGCCACCGTGATCCTGCGCGGCCTGCGCA
GCATCTACGAGAAGGCCCACGGGGTGCTGATCGACGAGGAGGCGCTGCAGGCGGCCGCCCAGCTCTCCGCCCGTTACATC
TCCGGCCGTCAGCTGCCGGACAAGGCTATTGACGTGCTCGATACCGCCTGTGCCCGGGTGGCCATCAACCTCACCACGCC
GCCGCGCGCGGTCAGCCACCTGCAAAATGCGCTGCGCCAGCGCGAGCTGGAGATCCGCCAGCTGGAGCGCCAGAGCCTGA
TAGGTCTCGGTGACAATGCAGAGCGCCTGGCCGAGTTGCAGGGGGCCCAGCAGGCTTGCCGTGAAGAACTGGCCGAGCAG
GAGGCCCGGTGGCAGCAACAGCAGGGGTTGGTACACCAGATTGTCGAGCTGCGCGCGGCGCTGCTGGCCGACCAGCAGGA
TGAGATGCTGGCCAGAGAGGCGCTGGATCTGGCCGATGCGCCGCTCGATCCGCAAGCCGCTGCCGAGCAGCTGGCCACCC
TCGAGCGCGAGCTGGCCGAGCTGCAGCAAGGAGAAGTGCTGGTCTCTGCCCACGTCGACAAGACCCAGATCGCCGCCGTC
ATCGCCGAGTGGACCGGGGTGCCCCTCAATCGCATCTCGCAGGGGGAGCTGGACGTGGTGACCCGCCTGCCGGAGTACCT
CGGCGAGCTCATCCAGGGGCAGGATGTGGCAGTGGCCCACCTGCACAAGCACCTGCTGACCGCCCGCGCCGACCTGCGTC
GGCCCGGCCGGCCGCTCGGCGCCTTCCTGCTGGTGGGGCCGAGCGGGGTCGGCAAGACCGAAACCGTGCTGCAGATTGCC
GAGCTGATGTTCGGTGGTCGCCAGTATCTGACCACCATCAACATGTCCGAGTATCAGGAGAAGCACACCGTCTCGCGCCT
GATCGGCTCGCCGCCCGGCTACGTCGGCTTCGGTGAGGGAGGCGTGTTGACCGAGGCCATCCGGCAGAAGCCTTACTCCG
TGGTGCTGCTGGACGAGGTGGAGAAGGCCCACCCGGACGTGCTCAACCTCTTCTATCAGGCGTTCGACAAGGGCGAGCTG
GCGGACGGGGAAGGGCGGATCATCGACTGCAAGAACGTGGTCTTCTTCCTCACCTCCAACCTCGGTTTCCAGACCATCGT
GGATCACGCCGAGCAGCCCGACGTGCTGCTGGACGCCCTCTATCCGGAGCTCGCCGCCTTCTTCAAGCCGGCGCTGCTGG
CGCGCATGGAGGTGATCCCCTATCTGCCGCTGGGTCACGACACGCTAGTACAGATCGTGGGCGGCAAGCTCAACCGGCTG
GTCAAGCTGCTCAAGGAGCGCTTTGGCGCCGAGGTGGTGCTGGACGACGAGGTGGCCGAGGAGATCCTGCTGCGGGCCAA
TCGCAGCGAGAACGGTGCCCGCATGCTCGAATCCGTCATCGACGGTGCCTTGTTGCCGCCGGTCTCCCTGCAGCTGCTGC
AGCGCCTCTCGGCCGGTGAACCCATCAAGCGCGTCCACTTTTCCGTGGCCGATCACCAGTTTGTGGCCGAGGTGGGGGCT
TGA