Detailed information of component protein


Summary

Component ID T6CP012965
Component protein type TssA
T6SS ID (Type) T6SS00948 experimental (Type i1)
Strain Aeromonas hydrophila NJ-35
Replicon chromosome
Sequence Protein sequence (482 a.a.); Nucleotide sequence (1446 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) U876_13520
Coordinate (Strand) 2952408..2953853 (-)
NCBI ID 827372797
GenBank CP006870
Uniprot ID UPI000588C231
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasJ PF16989.7 2e-78 232..474
ImpA_N PF06812.14 5e-15 13..110
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-481 MSYQHPWCARLLTSLPDEQIRGAVLADEPRWDYVETELVKLGALAHSQVDLNAVAEACLGLLESRTKDMRVLAQLLRCLQHPAKATPLGAAISLLEAWIQAYWLLAWPGNASQKQRLMVQIVKRFEGALPRICESASAAELAQLLAQAEQLERVWLAQCPDKGELLDPLVMGLKRAQRQQVAQAEANAAGQPQSSGAAAAGSPASVASTASGAGAMVLSGGGGSAAVDVDSSNDRAWRQTQLKVAELLIERQPEAAVGYRLRRHAVWAGITAVPMSGAGNKTPLAPMSADMVDEYRAAMNAPDQGLWQRIEQSLTLAPYWFEGHRLSAEVAQKLGFGAVAQAIAEELGTFLQRLPALRELAFSDGSPFLSPECSRWLQPAKSGRAGCGEAGLAEEVAQRHGEQGVAAALALLDERIAQLKEPRDRFHTLLVQAELLAQEGMEALARQHYQHLWQEASRLGLSHWEPGLVNRLESLAAPLSK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9900 - -


  Protein sequence: 482 a.a.    

>T6CP012965 CP006870:c2953853-2952408 [Aeromonas hydrophila NJ-35] [TssA]
MSYQHPWCARLLTSLPDEQIRGAVLADEPRWDYVETELVKLGALAHSQVDLNAVAEACLGLLESRTKDMRVLAQLLRCLQ
HPAKATPLGAAISLLEAWIQAYWLLAWPGNASQKQRLMVQIVKRFEGALPRICESASAAELAQLLAQAEQLERVWLAQCP
DKGELLDPLVMGLKRAQRQQVAQAEANAAGQPQSSGAAAAGSPASVASTASGAGAMVLSGGGGSAAVDVDSSNDRAWRQT
QLKVAELLIERQPEAAVGYRLRRHAVWAGITAVPMSGAGNKTPLAPMSADMVDEYRAAMNAPDQGLWQRIEQSLTLAPYW
FEGHRLSAEVAQKLGFGAVAQAIAEELGTFLQRLPALRELAFSDGSPFLSPECSRWLQPAKSGRAGCGEAGLAEEVAQRH
GEQGVAAALALLDERIAQLKEPRDRFHTLLVQAELLAQEGMEALARQHYQHLWQEASRLGLSHWEPGLVNRLESLAAPLS
K*

  Nucleotide sequence: 1446 bp    

>T6CP012965 CP006870:c2953853-2952408 [Aeromonas hydrophila NJ-35] [TssA]
ATGAGCTATCAACACCCCTGGTGTGCACGCCTGCTCACCAGCCTGCCGGATGAACAGATAAGAGGCGCCGTGCTGGCCGA
CGAGCCGCGCTGGGACTACGTGGAGACCGAGCTGGTCAAGCTGGGAGCCCTCGCTCACAGCCAGGTCGATCTCAATGCGG
TGGCCGAGGCCTGCCTCGGCTTGCTGGAGAGCCGCACCAAGGACATGCGGGTGCTGGCCCAGCTGCTGCGCTGTCTGCAG
CACCCGGCCAAGGCGACCCCGCTGGGGGCGGCGATCAGCCTGCTGGAGGCCTGGATCCAGGCTTACTGGCTGCTGGCCTG
GCCCGGCAATGCCAGCCAGAAGCAGCGGCTGATGGTGCAAATCGTCAAACGCTTCGAAGGGGCCTTGCCGCGCATTTGCG
AGAGCGCCTCGGCAGCCGAGCTGGCCCAGCTGCTGGCCCAGGCCGAGCAGCTGGAGCGGGTCTGGCTGGCGCAGTGCCCC
GACAAGGGGGAGCTGCTCGACCCGCTGGTGATGGGGCTGAAGCGGGCCCAGCGCCAGCAGGTGGCACAGGCCGAGGCCAA
TGCGGCAGGGCAGCCGCAAAGCAGCGGCGCGGCGGCAGCGGGCTCCCCGGCCTCGGTGGCGTCGACCGCCAGCGGTGCCG
GCGCCATGGTGCTCAGCGGCGGTGGCGGCAGTGCCGCCGTCGACGTCGACAGTTCCAACGATCGCGCCTGGCGTCAGACC
CAGCTCAAGGTGGCGGAGCTCCTGATCGAGCGTCAGCCCGAGGCGGCGGTGGGCTATCGACTGCGCCGTCATGCCGTCTG
GGCCGGGATCACGGCGGTCCCCATGAGCGGGGCGGGCAATAAAACCCCGCTGGCGCCCATGTCAGCGGACATGGTTGATG
AGTACCGCGCCGCCATGAACGCCCCTGATCAGGGGCTTTGGCAGCGCATAGAGCAGAGTCTGACCCTGGCACCTTACTGG
TTCGAGGGACACAGGCTCTCGGCCGAGGTGGCCCAGAAGCTCGGCTTCGGGGCGGTGGCCCAGGCGATCGCCGAGGAGCT
CGGGACTTTTCTGCAGCGCCTGCCGGCCCTGCGGGAACTGGCCTTCAGCGACGGCTCGCCGTTTCTCTCCCCCGAGTGCA
GCCGCTGGCTGCAACCGGCCAAGAGCGGCAGAGCGGGCTGTGGCGAGGCGGGGCTGGCCGAGGAGGTCGCCCAGCGCCAC
GGCGAGCAGGGAGTCGCGGCGGCGCTCGCCCTGCTCGATGAGCGGATTGCGCAGTTGAAAGAGCCAAGAGATCGCTTCCA
CACCTTGCTGGTGCAGGCGGAGCTGTTGGCGCAGGAAGGCATGGAGGCGCTTGCGCGCCAGCACTATCAACACTTGTGGC
AAGAGGCCAGTCGCCTTGGGTTGTCGCACTGGGAGCCCGGGCTGGTCAATCGCCTGGAGAGCCTGGCGGCGCCGTTGTCG
AAATGA