Detailed information of component protein


Summary

Component ID T6CP012963
Component protein type TssA
T6SS ID (Type) T6SS00948 experimental (Type i1)
Strain Aeromonas hydrophila NJ-35
Replicon chromosome
Sequence Protein sequence (477 a.a.); Nucleotide sequence (1431 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) U876_13510
Coordinate (Strand) 2947404..2948834 (-)
NCBI ID 827372795
GenBank CP006870
Uniprot ID UPI000588B572
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VasL PF12486.10 5.2e-54 324..470
ImpA_N PF06812.14 5.8e-23 10..115
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-249 MSQNQQGQQALKVGRDPRMLPEYEALRAEINKLSHASRPEVDWQRIHQLASLIFEKHGVDLQTAIYFTLARSRLQGLSGFTEGCEFLANLIVTQWESFWPPVHQERARIEMLDWFIARISDVIRQYQISHEDKRLIYRCERALQLISEKLHNADLSRIPRVENLVHFIEGYTHLFDETEIVIVSDEPGLKEDLQIPPMVFFKSDMESDHGSTVSASAPHLPQGSILVGREKGQVKPTVLKIEQHRRQRP
Transmembrane helix 250-272 AWFWFGCGLLSCALPVMGWFGWQ
Outside 273-476 QHQQEQTVAAQRLVQPAAELPRALSYDDIRQARIVLGEQTLQNMESDLVARYQNQLTRLEQTSPLYWYRYGEGLRNSLLMLYPDSLAVKALDKQWQTQLGGQQGDVISVPTYLDARAGVDALLDQLLELERQRKTVTISYLKSQLYEVQKNLMQNIPFSLRLGELEARKASQEPITAAELKSLENDLKALNIRLYQLQQGVSGS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9958 - -


  Protein sequence: 477 a.a.    

>T6CP012963 CP006870:c2948834-2947404 [Aeromonas hydrophila NJ-35] [TssA]
MSQNQQGQQALKVGRDPRMLPEYEALRAEINKLSHASRPEVDWQRIHQLASLIFEKHGVDLQTAIYFTLARSRLQGLSGF
TEGCEFLANLIVTQWESFWPPVHQERARIEMLDWFIARISDVIRQYQISHEDKRLIYRCERALQLISEKLHNADLSRIPR
VENLVHFIEGYTHLFDETEIVIVSDEPGLKEDLQIPPMVFFKSDMESDHGSTVSASAPHLPQGSILVGREKGQVKPTVLK
IEQHRRQRPAWFWFGCGLLSCALPVMGWFGWQQHQQEQTVAAQRLVQPAAELPRALSYDDIRQARIVLGEQTLQNMESDL
VARYQNQLTRLEQTSPLYWYRYGEGLRNSLLMLYPDSLAVKALDKQWQTQLGGQQGDVISVPTYLDARAGVDALLDQLLE
LERQRKTVTISYLKSQLYEVQKNLMQNIPFSLRLGELEARKASQEPITAAELKSLENDLKALNIRLYQLQQGVSGS*

  Nucleotide sequence: 1431 bp    

>T6CP012963 CP006870:c2948834-2947404 [Aeromonas hydrophila NJ-35] [TssA]
ATGTCACAGAATCAACAAGGTCAGCAGGCCCTGAAAGTGGGGCGCGACCCCAGGATGTTGCCGGAGTACGAGGCGCTGCG
GGCCGAGATCAACAAGCTCAGCCACGCTTCGCGCCCCGAGGTGGACTGGCAGCGGATCCATCAGCTCGCCAGCCTTATCT
TCGAAAAACACGGGGTGGATCTGCAGACCGCCATCTACTTCACCCTGGCCCGTTCGCGCCTGCAGGGGCTGAGCGGTTTT
ACCGAAGGGTGCGAGTTTCTCGCCAACCTCATCGTCACCCAGTGGGAGAGCTTCTGGCCGCCGGTCCATCAGGAGCGGGC
CCGCATCGAGATGCTCGACTGGTTCATCGCCCGTATCAGCGACGTCATTCGCCAGTACCAGATCAGCCACGAGGACAAGC
GGCTGATCTATCGCTGCGAGCGGGCGCTGCAGCTCATCAGCGAGAAGCTGCACAACGCGGATCTGAGCCGCATTCCCCGG
GTCGAGAATCTGGTGCACTTCATCGAGGGGTATACCCACCTCTTTGACGAGACCGAGATCGTCATCGTCTCCGACGAGCC
GGGCCTCAAGGAGGATCTGCAGATCCCGCCCATGGTGTTCTTCAAGTCAGATATGGAGAGTGATCACGGCAGCACGGTCT
CGGCATCTGCCCCGCACCTGCCCCAGGGCAGCATTCTGGTGGGGCGCGAGAAGGGACAGGTCAAGCCCACCGTGCTGAAG
ATTGAGCAGCACCGCCGGCAGCGTCCGGCCTGGTTCTGGTTTGGTTGCGGCCTGCTCAGCTGCGCCCTGCCGGTGATGGG
CTGGTTCGGCTGGCAGCAACATCAGCAGGAGCAAACCGTGGCGGCCCAGCGTCTGGTACAGCCAGCCGCCGAGTTGCCCC
GAGCCCTCAGCTATGACGACATTCGTCAGGCACGCATCGTGCTGGGTGAGCAGACCCTGCAGAACATGGAGAGCGATCTG
GTGGCCCGCTACCAGAACCAGTTGACCCGGCTCGAGCAGACGTCGCCGCTCTACTGGTATCGCTACGGCGAGGGGCTGCG
CAACTCGCTCTTGATGCTCTATCCCGACTCGTTGGCGGTCAAGGCGCTGGACAAGCAGTGGCAGACGCAGCTTGGCGGCC
AGCAGGGGGATGTCATCAGCGTGCCCACCTACCTGGATGCCCGCGCCGGGGTGGATGCCCTGCTCGATCAGCTGCTGGAG
CTGGAGCGCCAGCGCAAGACGGTGACCATCTCCTACCTCAAATCCCAGCTCTATGAAGTGCAGAAGAACCTGATGCAGAA
CATCCCGTTCAGTCTGCGCCTCGGTGAACTGGAGGCGAGAAAAGCCTCCCAGGAGCCCATCACGGCTGCCGAGCTCAAAA
GCCTGGAAAATGATCTGAAAGCGCTCAACATCCGTCTCTATCAGCTGCAACAGGGCGTTTCTGGTAGCTGA