Detailed information of component protein
Summary
External database links
Locus tag (Gene) | SMDB11_2276 |
Coordinate (Strand) | 2400742..2402670 (+) |
NCBI ID | CDG12851.1 |
GenBank | HG326223 |
Uniprot ID | - |
KEGG ID | - |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
Phage_GPD | PF05954.13 | 2.3e-89 | 25..330 |
Phage_base_V | PF04717.14 | 2.5e-14 | 385..452 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-642 | MLDRIIAHTPLGQEQLLFRSLDGIEALSTPFDFSIELLSTDARLDRKALLGQPLTLEIPTQGFLSAPRYLNGKITAIAVSSEEIGGTRYAVYNLHVQPDLWPMTKDRNFRIFQEQTVPQIVKTLLAEHNVQLEDQLTGDYRLWGYCVQYNESSFNFISRLMELEGIYYYFKHEMGKHTLVLGDAPHHHQPYPGYEMIPYHLTPSGGSTSEEGISQWTLSDRVTPGIYSLDDYDFRKPNAWLFQARQNPVSPTPGQIDVYDWPGRYTEHQQGEFYARVRQEAWQAEHQQIRGTATALGIAPGSTFTLYNAPHADDNREYLTLQANYHLKENRYASGDDQSSEHRIDFIVLPADVPWHPPQQATWPKTHGPQTARVVGPAGESIWTDKYGRIKVKFHWDRFGPKDDGSSCWVRVSSAWAGQGYGGVQIPRVNDEVVVDFINGDPDRPIVTGRVYNEASMPPWALPAAATQMGFMSRTKDGTADNANALRFEDKAGAEQVWIQAERNMDTQVKNDESHTIANDHTHLVGGNQIKRVVLNQATGVKGESSALTGKTRSDAVVNAFTLGSGESLRLECGESVIELLANGQINITGTSFNITVKEDGEINTGGQLDLNQPGGAARTAAPGGGHQAAIQSAVDQLFPKS |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9936 | - | - |
Protein sequence: 643 a.a.
>T6CP012960 HG326223:2400742-2402670 [Serratia marcescens subsp. marcescens Db11] [TssI]
MLDRIIAHTPLGQEQLLFRSLDGIEALSTPFDFSIELLSTDARLDRKALLGQPLTLEIPTQGFLSAPRYLNGKITAIAVS
SEEIGGTRYAVYNLHVQPDLWPMTKDRNFRIFQEQTVPQIVKTLLAEHNVQLEDQLTGDYRLWGYCVQYNESSFNFISRL
MELEGIYYYFKHEMGKHTLVLGDAPHHHQPYPGYEMIPYHLTPSGGSTSEEGISQWTLSDRVTPGIYSLDDYDFRKPNAW
LFQARQNPVSPTPGQIDVYDWPGRYTEHQQGEFYARVRQEAWQAEHQQIRGTATALGIAPGSTFTLYNAPHADDNREYLT
LQANYHLKENRYASGDDQSSEHRIDFIVLPADVPWHPPQQATWPKTHGPQTARVVGPAGESIWTDKYGRIKVKFHWDRFG
PKDDGSSCWVRVSSAWAGQGYGGVQIPRVNDEVVVDFINGDPDRPIVTGRVYNEASMPPWALPAAATQMGFMSRTKDGTA
DNANALRFEDKAGAEQVWIQAERNMDTQVKNDESHTIANDHTHLVGGNQIKRVVLNQATGVKGESSALTGKTRSDAVVNA
FTLGSGESLRLECGESVIELLANGQINITGTSFNITVKEDGEINTGGQLDLNQPGGAARTAAPGGGHQAAIQSAVDQLFP
KS*
MLDRIIAHTPLGQEQLLFRSLDGIEALSTPFDFSIELLSTDARLDRKALLGQPLTLEIPTQGFLSAPRYLNGKITAIAVS
SEEIGGTRYAVYNLHVQPDLWPMTKDRNFRIFQEQTVPQIVKTLLAEHNVQLEDQLTGDYRLWGYCVQYNESSFNFISRL
MELEGIYYYFKHEMGKHTLVLGDAPHHHQPYPGYEMIPYHLTPSGGSTSEEGISQWTLSDRVTPGIYSLDDYDFRKPNAW
LFQARQNPVSPTPGQIDVYDWPGRYTEHQQGEFYARVRQEAWQAEHQQIRGTATALGIAPGSTFTLYNAPHADDNREYLT
LQANYHLKENRYASGDDQSSEHRIDFIVLPADVPWHPPQQATWPKTHGPQTARVVGPAGESIWTDKYGRIKVKFHWDRFG
PKDDGSSCWVRVSSAWAGQGYGGVQIPRVNDEVVVDFINGDPDRPIVTGRVYNEASMPPWALPAAATQMGFMSRTKDGTA
DNANALRFEDKAGAEQVWIQAERNMDTQVKNDESHTIANDHTHLVGGNQIKRVVLNQATGVKGESSALTGKTRSDAVVNA
FTLGSGESLRLECGESVIELLANGQINITGTSFNITVKEDGEINTGGQLDLNQPGGAARTAAPGGGHQAAIQSAVDQLFP
KS*
Nucleotide sequence: 1929 bp
>T6CP012960 HG326223:2400742-2402670 [Serratia marcescens subsp. marcescens Db11] [TssI]
ATGTTGGACCGCATTATTGCGCACACGCCGCTGGGCCAGGAGCAACTGTTGTTCCGCTCACTGGACGGTATCGAAGCGCT
TTCCACCCCTTTTGACTTCTCTATTGAATTGCTGAGCACCGACGCGCGGCTCGATCGCAAAGCGCTGCTCGGCCAACCGC
TGACGCTGGAGATCCCAACCCAGGGCTTCCTCAGCGCCCCGCGCTACCTGAACGGCAAGATCACCGCCATCGCCGTCAGC
AGCGAAGAGATCGGCGGCACGCGCTACGCGGTGTATAACCTGCACGTGCAGCCGGATCTCTGGCCGATGACCAAGGACCG
CAACTTCCGCATCTTCCAGGAACAGACGGTGCCGCAGATCGTCAAGACCCTGCTGGCGGAGCACAACGTGCAGCTGGAAG
ATCAGCTGACCGGCGACTATCGCCTGTGGGGCTACTGCGTGCAGTACAACGAAAGCAGTTTCAACTTCATCAGCCGCCTG
ATGGAGCTGGAGGGCATCTATTACTATTTCAAACACGAGATGGGCAAACACACGCTGGTGCTCGGGGACGCCCCCCACCA
CCACCAGCCCTATCCCGGCTATGAGATGATCCCCTACCACCTGACGCCGTCCGGCGGCAGCACCAGCGAGGAAGGCATCA
GCCAGTGGACGTTGTCCGATCGCGTCACGCCGGGTATCTACAGCCTGGACGACTACGATTTCCGCAAGCCGAACGCCTGG
CTGTTCCAGGCACGGCAAAACCCGGTCTCGCCGACGCCGGGGCAGATCGACGTTTACGACTGGCCGGGCCGCTACACCGA
GCATCAGCAGGGGGAGTTCTACGCCCGCGTGCGCCAGGAGGCCTGGCAGGCCGAACATCAGCAGATCCGCGGTACCGCCA
CCGCGCTGGGCATTGCTCCCGGCAGCACCTTTACGCTGTATAACGCCCCGCACGCCGACGACAACCGCGAGTACCTGACG
CTGCAGGCCAACTACCATCTGAAAGAGAACCGCTATGCCAGCGGCGACGATCAGAGCAGCGAACACCGTATCGACTTCAT
CGTGCTGCCGGCGGACGTGCCCTGGCACCCGCCGCAGCAGGCCACCTGGCCGAAAACCCACGGGCCGCAGACCGCCCGGG
TGGTCGGCCCGGCCGGCGAATCGATTTGGACCGACAAATACGGCCGTATCAAGGTGAAGTTCCACTGGGATCGCTTCGGG
CCGAAAGACGACGGCAGCTCCTGCTGGGTGCGCGTCTCCAGCGCCTGGGCCGGCCAAGGCTACGGCGGCGTGCAGATCCC
GCGCGTGAACGACGAAGTGGTGGTGGACTTTATCAACGGCGATCCGGATCGGCCGATCGTCACCGGGCGCGTCTATAACG
AAGCCAGCATGCCGCCTTGGGCGCTGCCGGCCGCCGCCACCCAGATGGGCTTTATGAGCCGCACCAAGGACGGCACCGCC
GACAACGCCAACGCCCTGCGTTTCGAAGACAAGGCCGGCGCCGAACAGGTGTGGATCCAGGCGGAGCGCAACATGGACAC
CCAGGTGAAAAACGATGAAAGCCACACCATCGCTAACGACCACACGCATCTGGTGGGCGGCAACCAGATCAAACGGGTGG
TGCTCAATCAGGCAACCGGCGTCAAAGGCGAATCCTCCGCGCTGACCGGCAAAACGCGCAGCGACGCCGTGGTTAACGCC
TTTACCCTCGGCTCCGGCGAATCGCTGCGGCTCGAGTGCGGCGAAAGCGTGATCGAGCTGCTGGCGAACGGCCAAATCAA
CATCACCGGCACCAGCTTCAATATCACGGTGAAAGAGGACGGAGAGATCAATACCGGCGGCCAGCTGGATCTCAACCAGC
CTGGCGGCGCCGCGCGCACCGCCGCACCGGGCGGTGGCCATCAGGCGGCAATCCAGAGCGCCGTCGATCAGCTGTTCCCG
AAATCCTGA
ATGTTGGACCGCATTATTGCGCACACGCCGCTGGGCCAGGAGCAACTGTTGTTCCGCTCACTGGACGGTATCGAAGCGCT
TTCCACCCCTTTTGACTTCTCTATTGAATTGCTGAGCACCGACGCGCGGCTCGATCGCAAAGCGCTGCTCGGCCAACCGC
TGACGCTGGAGATCCCAACCCAGGGCTTCCTCAGCGCCCCGCGCTACCTGAACGGCAAGATCACCGCCATCGCCGTCAGC
AGCGAAGAGATCGGCGGCACGCGCTACGCGGTGTATAACCTGCACGTGCAGCCGGATCTCTGGCCGATGACCAAGGACCG
CAACTTCCGCATCTTCCAGGAACAGACGGTGCCGCAGATCGTCAAGACCCTGCTGGCGGAGCACAACGTGCAGCTGGAAG
ATCAGCTGACCGGCGACTATCGCCTGTGGGGCTACTGCGTGCAGTACAACGAAAGCAGTTTCAACTTCATCAGCCGCCTG
ATGGAGCTGGAGGGCATCTATTACTATTTCAAACACGAGATGGGCAAACACACGCTGGTGCTCGGGGACGCCCCCCACCA
CCACCAGCCCTATCCCGGCTATGAGATGATCCCCTACCACCTGACGCCGTCCGGCGGCAGCACCAGCGAGGAAGGCATCA
GCCAGTGGACGTTGTCCGATCGCGTCACGCCGGGTATCTACAGCCTGGACGACTACGATTTCCGCAAGCCGAACGCCTGG
CTGTTCCAGGCACGGCAAAACCCGGTCTCGCCGACGCCGGGGCAGATCGACGTTTACGACTGGCCGGGCCGCTACACCGA
GCATCAGCAGGGGGAGTTCTACGCCCGCGTGCGCCAGGAGGCCTGGCAGGCCGAACATCAGCAGATCCGCGGTACCGCCA
CCGCGCTGGGCATTGCTCCCGGCAGCACCTTTACGCTGTATAACGCCCCGCACGCCGACGACAACCGCGAGTACCTGACG
CTGCAGGCCAACTACCATCTGAAAGAGAACCGCTATGCCAGCGGCGACGATCAGAGCAGCGAACACCGTATCGACTTCAT
CGTGCTGCCGGCGGACGTGCCCTGGCACCCGCCGCAGCAGGCCACCTGGCCGAAAACCCACGGGCCGCAGACCGCCCGGG
TGGTCGGCCCGGCCGGCGAATCGATTTGGACCGACAAATACGGCCGTATCAAGGTGAAGTTCCACTGGGATCGCTTCGGG
CCGAAAGACGACGGCAGCTCCTGCTGGGTGCGCGTCTCCAGCGCCTGGGCCGGCCAAGGCTACGGCGGCGTGCAGATCCC
GCGCGTGAACGACGAAGTGGTGGTGGACTTTATCAACGGCGATCCGGATCGGCCGATCGTCACCGGGCGCGTCTATAACG
AAGCCAGCATGCCGCCTTGGGCGCTGCCGGCCGCCGCCACCCAGATGGGCTTTATGAGCCGCACCAAGGACGGCACCGCC
GACAACGCCAACGCCCTGCGTTTCGAAGACAAGGCCGGCGCCGAACAGGTGTGGATCCAGGCGGAGCGCAACATGGACAC
CCAGGTGAAAAACGATGAAAGCCACACCATCGCTAACGACCACACGCATCTGGTGGGCGGCAACCAGATCAAACGGGTGG
TGCTCAATCAGGCAACCGGCGTCAAAGGCGAATCCTCCGCGCTGACCGGCAAAACGCGCAGCGACGCCGTGGTTAACGCC
TTTACCCTCGGCTCCGGCGAATCGCTGCGGCTCGAGTGCGGCGAAAGCGTGATCGAGCTGCTGGCGAACGGCCAAATCAA
CATCACCGGCACCAGCTTCAATATCACGGTGAAAGAGGACGGAGAGATCAATACCGGCGGCCAGCTGGATCTCAACCAGC
CTGGCGGCGCCGCGCGCACCGCCGCACCGGGCGGTGGCCATCAGGCGGCAATCCAGAGCGCCGTCGATCAGCTGTTCCCG
AAATCCTGA