Detailed information of component protein
Summary
External database links
Locus tag (Gene) | SMDB11_2253 |
Coordinate (Strand) | 2374478..2375824 (+) |
NCBI ID | CDG12828.1 |
GenBank | HG326223 |
Uniprot ID | - |
KEGG ID | - |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
T6SS_VasE | PF05936.14 | 6.8e-150 | 19..442 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-448 | MKDAHKVVWTEGMFLRPHHFQQAENYLEGYMRNWGQAHSGCFWGFLTLDLDQTLLRQGKIALNAASGIMPDGTPFRFSGAQQAPAPLTIAENKTGENVVLALPTYRAGREDVIFQESPEALARYLAYENEVDDLNAVSVGSAALQFGRLRLRLMLESELNAEWTALGVTRVLEKRGDNSLRLDTTQIPPMLNCQGNPVLKTFINDLQGLLQQRSQQMSQRLLQPGRGGSSEMVDFMLLQLINRHLGQVSHAYHLDHLHPERLFADWLQFATELASFSAQRTPEGRLPVYDHDNLALCFGKLMLLLRQGLSVVLEDNAIQLTLVERSHGLNVATVQDAKMMRDFGFVLAVRADVAAEVLLTHFPAQMKIAPVTRIRDLVQLQLPGIGLRTMPAAPRQIPYHAGYTYFELEKGGDLWKQMEKSSAFALHLAGEFPGLDMEFWAIRSHTDR |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9935 | - | - |
Protein sequence: 449 a.a.
>T6CP012949 HG326223:2374478-2375824 [Serratia marcescens subsp. marcescens Db11] [TssK]
MKDAHKVVWTEGMFLRPHHFQQAENYLEGYMRNWGQAHSGCFWGFLTLDLDQTLLRQGKIALNAASGIMPDGTPFRFSGA
QQAPAPLTIAENKTGENVVLALPTYRAGREDVIFQESPEALARYLAYENEVDDLNAVSVGSAALQFGRLRLRLMLESELN
AEWTALGVTRVLEKRGDNSLRLDTTQIPPMLNCQGNPVLKTFINDLQGLLQQRSQQMSQRLLQPGRGGSSEMVDFMLLQL
INRHLGQVSHAYHLDHLHPERLFADWLQFATELASFSAQRTPEGRLPVYDHDNLALCFGKLMLLLRQGLSVVLEDNAIQL
TLVERSHGLNVATVQDAKMMRDFGFVLAVRADVAAEVLLTHFPAQMKIAPVTRIRDLVQLQLPGIGLRTMPAAPRQIPYH
AGYTYFELEKGGDLWKQMEKSSAFALHLAGEFPGLDMEFWAIRSHTDR*
MKDAHKVVWTEGMFLRPHHFQQAENYLEGYMRNWGQAHSGCFWGFLTLDLDQTLLRQGKIALNAASGIMPDGTPFRFSGA
QQAPAPLTIAENKTGENVVLALPTYRAGREDVIFQESPEALARYLAYENEVDDLNAVSVGSAALQFGRLRLRLMLESELN
AEWTALGVTRVLEKRGDNSLRLDTTQIPPMLNCQGNPVLKTFINDLQGLLQQRSQQMSQRLLQPGRGGSSEMVDFMLLQL
INRHLGQVSHAYHLDHLHPERLFADWLQFATELASFSAQRTPEGRLPVYDHDNLALCFGKLMLLLRQGLSVVLEDNAIQL
TLVERSHGLNVATVQDAKMMRDFGFVLAVRADVAAEVLLTHFPAQMKIAPVTRIRDLVQLQLPGIGLRTMPAAPRQIPYH
AGYTYFELEKGGDLWKQMEKSSAFALHLAGEFPGLDMEFWAIRSHTDR*
Nucleotide sequence: 1347 bp
>T6CP012949 HG326223:2374478-2375824 [Serratia marcescens subsp. marcescens Db11] [TssK]
ATGAAAGATGCTCATAAGGTTGTCTGGACTGAGGGGATGTTTTTGCGCCCTCACCATTTCCAGCAGGCGGAAAACTATCT
CGAAGGCTATATGCGCAACTGGGGCCAGGCCCACAGCGGCTGTTTCTGGGGGTTCCTCACCCTGGATCTGGACCAAACGC
TGCTGCGCCAGGGCAAGATTGCGCTCAACGCCGCCAGCGGCATCATGCCGGACGGCACGCCGTTTCGCTTCTCCGGCGCC
CAGCAGGCGCCCGCGCCGCTGACCATCGCTGAAAACAAGACCGGTGAAAACGTGGTGCTGGCTCTGCCGACCTACCGCGC
GGGGCGTGAAGACGTGATCTTTCAGGAAAGCCCGGAGGCGCTGGCGCGCTATCTGGCTTATGAGAACGAAGTCGACGATC
TCAACGCCGTCTCGGTGGGCAGCGCGGCCTTGCAGTTCGGTCGCCTGCGCCTGCGGCTGATGCTGGAGAGTGAGCTCAAC
GCCGAATGGACGGCGCTCGGCGTTACCCGCGTGCTGGAAAAGCGCGGTGACAACAGCCTGCGTCTCGATACCACGCAGAT
CCCGCCGATGCTGAACTGCCAGGGCAACCCGGTACTGAAAACCTTCATCAACGATCTGCAGGGCCTGCTGCAACAGCGCA
GCCAGCAGATGAGCCAGCGCCTGCTGCAGCCGGGCCGCGGCGGCAGTTCCGAAATGGTCGATTTCATGCTGCTGCAGCTG
ATCAACCGCCATCTCGGCCAGGTGAGCCACGCCTACCACCTCGATCATCTGCACCCGGAGCGCCTGTTCGCCGATTGGCT
GCAGTTCGCCACCGAGCTCGCCAGCTTCTCGGCGCAGCGCACCCCGGAAGGCCGCCTGCCGGTGTATGACCACGACAACC
TGGCGCTGTGCTTCGGCAAGCTGATGCTGCTGCTGCGTCAGGGGCTGTCGGTGGTGCTGGAAGACAACGCCATTCAGCTG
ACGCTGGTCGAACGCTCCCACGGGCTGAACGTCGCCACCGTGCAGGACGCCAAAATGATGCGCGATTTTGGCTTCGTTCT
GGCAGTGCGCGCCGACGTGGCCGCCGAGGTGTTGCTGACCCACTTCCCGGCGCAGATGAAGATCGCCCCGGTCACGCGCA
TCCGCGATCTGGTGCAGCTGCAGCTGCCGGGCATCGGTCTGCGCACCATGCCCGCTGCGCCGCGCCAGATCCCCTATCAC
GCCGGCTACACCTACTTCGAGCTGGAAAAAGGCGGCGACCTGTGGAAACAGATGGAGAAATCCAGCGCCTTCGCCCTGCA
CCTGGCCGGCGAATTCCCGGGGCTGGACATGGAATTTTGGGCGATTCGCAGCCATACGGACCGGTAA
ATGAAAGATGCTCATAAGGTTGTCTGGACTGAGGGGATGTTTTTGCGCCCTCACCATTTCCAGCAGGCGGAAAACTATCT
CGAAGGCTATATGCGCAACTGGGGCCAGGCCCACAGCGGCTGTTTCTGGGGGTTCCTCACCCTGGATCTGGACCAAACGC
TGCTGCGCCAGGGCAAGATTGCGCTCAACGCCGCCAGCGGCATCATGCCGGACGGCACGCCGTTTCGCTTCTCCGGCGCC
CAGCAGGCGCCCGCGCCGCTGACCATCGCTGAAAACAAGACCGGTGAAAACGTGGTGCTGGCTCTGCCGACCTACCGCGC
GGGGCGTGAAGACGTGATCTTTCAGGAAAGCCCGGAGGCGCTGGCGCGCTATCTGGCTTATGAGAACGAAGTCGACGATC
TCAACGCCGTCTCGGTGGGCAGCGCGGCCTTGCAGTTCGGTCGCCTGCGCCTGCGGCTGATGCTGGAGAGTGAGCTCAAC
GCCGAATGGACGGCGCTCGGCGTTACCCGCGTGCTGGAAAAGCGCGGTGACAACAGCCTGCGTCTCGATACCACGCAGAT
CCCGCCGATGCTGAACTGCCAGGGCAACCCGGTACTGAAAACCTTCATCAACGATCTGCAGGGCCTGCTGCAACAGCGCA
GCCAGCAGATGAGCCAGCGCCTGCTGCAGCCGGGCCGCGGCGGCAGTTCCGAAATGGTCGATTTCATGCTGCTGCAGCTG
ATCAACCGCCATCTCGGCCAGGTGAGCCACGCCTACCACCTCGATCATCTGCACCCGGAGCGCCTGTTCGCCGATTGGCT
GCAGTTCGCCACCGAGCTCGCCAGCTTCTCGGCGCAGCGCACCCCGGAAGGCCGCCTGCCGGTGTATGACCACGACAACC
TGGCGCTGTGCTTCGGCAAGCTGATGCTGCTGCTGCGTCAGGGGCTGTCGGTGGTGCTGGAAGACAACGCCATTCAGCTG
ACGCTGGTCGAACGCTCCCACGGGCTGAACGTCGCCACCGTGCAGGACGCCAAAATGATGCGCGATTTTGGCTTCGTTCT
GGCAGTGCGCGCCGACGTGGCCGCCGAGGTGTTGCTGACCCACTTCCCGGCGCAGATGAAGATCGCCCCGGTCACGCGCA
TCCGCGATCTGGTGCAGCTGCAGCTGCCGGGCATCGGTCTGCGCACCATGCCCGCTGCGCCGCGCCAGATCCCCTATCAC
GCCGGCTACACCTACTTCGAGCTGGAAAAAGGCGGCGACCTGTGGAAACAGATGGAGAAATCCAGCGCCTTCGCCCTGCA
CCTGGCCGGCGAATTCCCGGGGCTGGACATGGAATTTTGGGCGATTCGCAGCCATACGGACCGGTAA