Detailed information of component protein


Summary

Component ID T6CP012940
Component protein type TssC
T6SS ID (Type) T6SS00937 experimental (Type i1)
Strain Escherichia coli DE719
Replicon chromosome
Sequence Protein sequence (352 a.a.); Nucleotide sequence (1056 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) -
Coordinate (Strand) 18101..19156 (-)
NCBI ID 700289672
GenBank KM251715
Uniprot ID A0A097QQT3_ECOLX
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 2.1e-86 8..224
VipB_2 PF18945.2 7.3e-45 238..348

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-351 MYIQAVTGQFGGEPVAAVIGNFAFKNTTPDMKLLKYISQVSAMAHSPFLSSVSSEFFGLDSWTELPGIKEPGAIFEGPAYSRWRALRESEDSRYLGLTAPRFLLRHPYSPDENPVKTFRYHEDVSQSHESYLWGNTSFLLAANLAESFAKYRWCPNIIGPSSGGAVKDLPVHLYESMGQMQAKIPTEVLITDRREYELAEEGFITLTMRKGSDNACFFSANSVQKPKTFPKTPEGKAAETNYKLGTQLPYLFVISRLAHYIKVIQREQLGSWKERSDLERELNTWIRQYVADQENPPAEVRSHRPLRQAKIEVLDVDGEPGWYQVAISVRPHFKYMGASFDLSLVGRLDKE



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9781 - -



  Protein sequence: 352 a.a.    

>T6CP012940 KM251715:c19156-18101 [Escherichia coli] [TssC]
MYIQAVTGQFGGEPVAAVIGNFAFKNTTPDMKLLKYISQVSAMAHSPFLSSVSSEFFGLDSWTELPGIKEPGAIFEGPAY
SRWRALRESEDSRYLGLTAPRFLLRHPYSPDENPVKTFRYHEDVSQSHESYLWGNTSFLLAANLAESFAKYRWCPNIIGP
SSGGAVKDLPVHLYESMGQMQAKIPTEVLITDRREYELAEEGFITLTMRKGSDNACFFSANSVQKPKTFPKTPEGKAAET
NYKLGTQLPYLFVISRLAHYIKVIQREQLGSWKERSDLERELNTWIRQYVADQENPPAEVRSHRPLRQAKIEVLDVDGEP
GWYQVAISVRPHFKYMGASFDLSLVGRLDKE*

  Nucleotide sequence: 1056 bp    

>T6CP012940 KM251715:c19156-18101 [Escherichia coli] [TssC]
ATGTATATTCAAGCGGTTACCGGACAATTTGGCGGTGAGCCAGTGGCGGCGGTAATCGGCAACTTTGCCTTTAAGAACAC
CACGCCGGATATGAAGCTGCTGAAATATATCAGCCAGGTCAGCGCGATGGCGCACAGCCCGTTCCTGTCGTCAGTATCAT
CCGAATTTTTCGGTCTGGATTCATGGACAGAGTTACCGGGGATCAAAGAACCGGGTGCCATCTTTGAAGGCCCGGCCTAC
TCCCGCTGGCGCGCCCTGCGTGAATCGGAAGATTCCCGTTACCTGGGCCTGACCGCCCCCCGGTTCCTGCTGCGCCACCC
TTACTCACCGGATGAAAACCCTGTCAAAACCTTCCGTTACCATGAAGATGTCAGCCAGAGTCATGAGTCTTATCTGTGGG
GGAATACCTCGTTTTTACTGGCCGCCAACCTGGCGGAAAGTTTTGCTAAGTATCGCTGGTGCCCAAATATTATTGGCCCT
TCCAGCGGCGGCGCAGTCAAAGACCTCCCGGTGCATCTGTATGAATCCATGGGGCAAATGCAGGCAAAAATTCCGACTGA
AGTGTTGATCACTGACCGGAGAGAGTATGAGCTGGCGGAAGAGGGCTTTATCACACTGACCATGCGTAAAGGGTCTGATA
ATGCGTGCTTTTTCTCGGCCAACTCGGTGCAGAAACCCAAAACATTCCCCAAAACCCCCGAAGGCAAGGCTGCGGAGACC
AACTATAAACTCGGCACCCAGCTGCCATACTTGTTTGTTATCAGCAGGTTAGCGCATTACATCAAGGTAATTCAGCGCGA
ACAGCTTGGCTCATGGAAAGAACGTAGTGACCTGGAGCGTGAGCTGAACACCTGGATTCGCCAGTATGTTGCTGACCAGG
AAAATCCGCCTGCCGAAGTCCGCAGCCACCGGCCTTTGCGTCAGGCTAAGATCGAGGTACTGGATGTGGATGGTGAGCCG
GGCTGGTACCAGGTCGCGATTTCTGTCAGACCGCATTTTAAATACATGGGTGCCAGTTTCGACCTGAGCCTGGTCGGACG
ACTGGATAAGGAATAA