Detailed information of component protein
Summary
Component ID | T6CP012940 |
Component protein type | TssC |
T6SS ID (Type) | T6SS00937 (Type i1) |
Strain | Escherichia coli DE719 |
Replicon | chromosome |
Sequence | Protein sequence (352 a.a.); Nucleotide sequence (1056 bp) |
Reference |
External database links
Locus tag (Gene) | - |
Coordinate (Strand) | 18101..19156 (-) |
NCBI ID | 700289672 |
GenBank | KM251715 |
Uniprot ID | A0A097QQT3_ECOLX |
KEGG ID | - |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
VipB | PF05943.14 | 2.1e-86 | 8..224 |
VipB_2 | PF18945.2 | 7.3e-45 | 238..348 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-351 | MYIQAVTGQFGGEPVAAVIGNFAFKNTTPDMKLLKYISQVSAMAHSPFLSSVSSEFFGLDSWTELPGIKEPGAIFEGPAYSRWRALRESEDSRYLGLTAPRFLLRHPYSPDENPVKTFRYHEDVSQSHESYLWGNTSFLLAANLAESFAKYRWCPNIIGPSSGGAVKDLPVHLYESMGQMQAKIPTEVLITDRREYELAEEGFITLTMRKGSDNACFFSANSVQKPKTFPKTPEGKAAETNYKLGTQLPYLFVISRLAHYIKVIQREQLGSWKERSDLERELNTWIRQYVADQENPPAEVRSHRPLRQAKIEVLDVDGEPGWYQVAISVRPHFKYMGASFDLSLVGRLDKE |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9781 | - | - |
Protein sequence: 352 a.a.
>T6CP012940 KM251715:c19156-18101 [Escherichia coli] [TssC]
MYIQAVTGQFGGEPVAAVIGNFAFKNTTPDMKLLKYISQVSAMAHSPFLSSVSSEFFGLDSWTELPGIKEPGAIFEGPAY
SRWRALRESEDSRYLGLTAPRFLLRHPYSPDENPVKTFRYHEDVSQSHESYLWGNTSFLLAANLAESFAKYRWCPNIIGP
SSGGAVKDLPVHLYESMGQMQAKIPTEVLITDRREYELAEEGFITLTMRKGSDNACFFSANSVQKPKTFPKTPEGKAAET
NYKLGTQLPYLFVISRLAHYIKVIQREQLGSWKERSDLERELNTWIRQYVADQENPPAEVRSHRPLRQAKIEVLDVDGEP
GWYQVAISVRPHFKYMGASFDLSLVGRLDKE*
MYIQAVTGQFGGEPVAAVIGNFAFKNTTPDMKLLKYISQVSAMAHSPFLSSVSSEFFGLDSWTELPGIKEPGAIFEGPAY
SRWRALRESEDSRYLGLTAPRFLLRHPYSPDENPVKTFRYHEDVSQSHESYLWGNTSFLLAANLAESFAKYRWCPNIIGP
SSGGAVKDLPVHLYESMGQMQAKIPTEVLITDRREYELAEEGFITLTMRKGSDNACFFSANSVQKPKTFPKTPEGKAAET
NYKLGTQLPYLFVISRLAHYIKVIQREQLGSWKERSDLERELNTWIRQYVADQENPPAEVRSHRPLRQAKIEVLDVDGEP
GWYQVAISVRPHFKYMGASFDLSLVGRLDKE*
Nucleotide sequence: 1056 bp
>T6CP012940 KM251715:c19156-18101 [Escherichia coli] [TssC]
ATGTATATTCAAGCGGTTACCGGACAATTTGGCGGTGAGCCAGTGGCGGCGGTAATCGGCAACTTTGCCTTTAAGAACAC
CACGCCGGATATGAAGCTGCTGAAATATATCAGCCAGGTCAGCGCGATGGCGCACAGCCCGTTCCTGTCGTCAGTATCAT
CCGAATTTTTCGGTCTGGATTCATGGACAGAGTTACCGGGGATCAAAGAACCGGGTGCCATCTTTGAAGGCCCGGCCTAC
TCCCGCTGGCGCGCCCTGCGTGAATCGGAAGATTCCCGTTACCTGGGCCTGACCGCCCCCCGGTTCCTGCTGCGCCACCC
TTACTCACCGGATGAAAACCCTGTCAAAACCTTCCGTTACCATGAAGATGTCAGCCAGAGTCATGAGTCTTATCTGTGGG
GGAATACCTCGTTTTTACTGGCCGCCAACCTGGCGGAAAGTTTTGCTAAGTATCGCTGGTGCCCAAATATTATTGGCCCT
TCCAGCGGCGGCGCAGTCAAAGACCTCCCGGTGCATCTGTATGAATCCATGGGGCAAATGCAGGCAAAAATTCCGACTGA
AGTGTTGATCACTGACCGGAGAGAGTATGAGCTGGCGGAAGAGGGCTTTATCACACTGACCATGCGTAAAGGGTCTGATA
ATGCGTGCTTTTTCTCGGCCAACTCGGTGCAGAAACCCAAAACATTCCCCAAAACCCCCGAAGGCAAGGCTGCGGAGACC
AACTATAAACTCGGCACCCAGCTGCCATACTTGTTTGTTATCAGCAGGTTAGCGCATTACATCAAGGTAATTCAGCGCGA
ACAGCTTGGCTCATGGAAAGAACGTAGTGACCTGGAGCGTGAGCTGAACACCTGGATTCGCCAGTATGTTGCTGACCAGG
AAAATCCGCCTGCCGAAGTCCGCAGCCACCGGCCTTTGCGTCAGGCTAAGATCGAGGTACTGGATGTGGATGGTGAGCCG
GGCTGGTACCAGGTCGCGATTTCTGTCAGACCGCATTTTAAATACATGGGTGCCAGTTTCGACCTGAGCCTGGTCGGACG
ACTGGATAAGGAATAA
ATGTATATTCAAGCGGTTACCGGACAATTTGGCGGTGAGCCAGTGGCGGCGGTAATCGGCAACTTTGCCTTTAAGAACAC
CACGCCGGATATGAAGCTGCTGAAATATATCAGCCAGGTCAGCGCGATGGCGCACAGCCCGTTCCTGTCGTCAGTATCAT
CCGAATTTTTCGGTCTGGATTCATGGACAGAGTTACCGGGGATCAAAGAACCGGGTGCCATCTTTGAAGGCCCGGCCTAC
TCCCGCTGGCGCGCCCTGCGTGAATCGGAAGATTCCCGTTACCTGGGCCTGACCGCCCCCCGGTTCCTGCTGCGCCACCC
TTACTCACCGGATGAAAACCCTGTCAAAACCTTCCGTTACCATGAAGATGTCAGCCAGAGTCATGAGTCTTATCTGTGGG
GGAATACCTCGTTTTTACTGGCCGCCAACCTGGCGGAAAGTTTTGCTAAGTATCGCTGGTGCCCAAATATTATTGGCCCT
TCCAGCGGCGGCGCAGTCAAAGACCTCCCGGTGCATCTGTATGAATCCATGGGGCAAATGCAGGCAAAAATTCCGACTGA
AGTGTTGATCACTGACCGGAGAGAGTATGAGCTGGCGGAAGAGGGCTTTATCACACTGACCATGCGTAAAGGGTCTGATA
ATGCGTGCTTTTTCTCGGCCAACTCGGTGCAGAAACCCAAAACATTCCCCAAAACCCCCGAAGGCAAGGCTGCGGAGACC
AACTATAAACTCGGCACCCAGCTGCCATACTTGTTTGTTATCAGCAGGTTAGCGCATTACATCAAGGTAATTCAGCGCGA
ACAGCTTGGCTCATGGAAAGAACGTAGTGACCTGGAGCGTGAGCTGAACACCTGGATTCGCCAGTATGTTGCTGACCAGG
AAAATCCGCCTGCCGAAGTCCGCAGCCACCGGCCTTTGCGTCAGGCTAAGATCGAGGTACTGGATGTGGATGGTGAGCCG
GGCTGGTACCAGGTCGCGATTTCTGTCAGACCGCATTTTAAATACATGGGTGCCAGTTTCGACCTGAGCCTGGTCGGACG
ACTGGATAAGGAATAA