Detailed information of component protein


Summary

Component ID T6CP012935
Component protein type TssK
T6SS ID (Type) T6SS00937 experimental (Type i1)
Strain Escherichia coli DE719
Replicon chromosome
Sequence Protein sequence (449 a.a.); Nucleotide sequence (1347 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 11643..12989 (-)
NCBI ID 700289665
GenBank KM251715
Uniprot ID Q6TKU3_ECOLX
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 2.2e-133 20..446
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-448 MATMKNKVIWQEGLFALPQHFQQQQRHCEYLLTRRLDALGDFFWGFTELSINTELLAQGKIMIDRAAGCMPDGTVFSIPDQDLLPEPFQPGTLSSKESHNIYLALPVISDVINEIQGLHSAGQGTERYRLTHTRVRDFHTDEGDEQPVGLGQLIPRIVSGADDLSAMVTLPLCRILNKNATGALVLDNTFIPTIQAVRVSGLLGAFSGEVQGLLATRAADLAGRIGSPEQSGIADVAEFMMLQMLNRYQMQFTHRSQLHTLHPEAFYRDLVGLLGELMTFTEGNRLPCTVEPYNHRDLTATFTRTVIPELRRALNTVLVPRAQNLPLFFSEGTWIATINDPTLLQSCKLVLAVRARMPYDQVQRQFIQQSKVAATDKIRSVVSVQVPGIPLHTLTAAPRQLPYHEGYVYFELEKGTPAWQDVIKAGALALHISGSFPDLNLQLWAIRG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9952 - -


  Protein sequence: 449 a.a.    

>T6CP012935 KM251715:c12989-11643 [Escherichia coli] [TssK]
MATMKNKVIWQEGLFALPQHFQQQQRHCEYLLTRRLDALGDFFWGFTELSINTELLAQGKIMIDRAAGCMPDGTVFSIPD
QDLLPEPFQPGTLSSKESHNIYLALPVISDVINEIQGLHSAGQGTERYRLTHTRVRDFHTDEGDEQPVGLGQLIPRIVSG
ADDLSAMVTLPLCRILNKNATGALVLDNTFIPTIQAVRVSGLLGAFSGEVQGLLATRAADLAGRIGSPEQSGIADVAEFM
MLQMLNRYQMQFTHRSQLHTLHPEAFYRDLVGLLGELMTFTEGNRLPCTVEPYNHRDLTATFTRTVIPELRRALNTVLVP
RAQNLPLFFSEGTWIATINDPTLLQSCKLVLAVRARMPYDQVQRQFIQQSKVAATDKIRSVVSVQVPGIPLHTLTAAPRQ
LPYHEGYVYFELEKGTPAWQDVIKAGALALHISGSFPDLNLQLWAIRG*

  Nucleotide sequence: 1347 bp    

>T6CP012935 KM251715:c12989-11643 [Escherichia coli] [TssK]
ATGGCAACAATGAAAAACAAAGTGATCTGGCAGGAAGGGCTGTTTGCCCTGCCGCAGCATTTTCAGCAACAGCAGCGTCA
CTGCGAGTACCTGCTGACCCGTCGTCTGGATGCACTGGGTGATTTTTTCTGGGGTTTTACGGAACTCTCCATCAATACAG
AACTGCTTGCCCAGGGCAAAATCATGATTGACCGTGCGGCGGGCTGTATGCCTGACGGCACCGTATTCAGCATTCCCGAC
CAGGATCTGCTGCCGGAACCTTTCCAGCCGGGAACCCTTTCATCGAAAGAGAGCCACAATATTTATCTGGCGCTGCCGGT
GATAAGCGACGTGATCAATGAAATCCAGGGGTTGCACAGCGCCGGTCAGGGTACGGAGCGTTACCGCCTCACCCATACCC
GCGTCCGTGATTTTCACACTGACGAAGGCGACGAACAGCCAGTCGGTCTGGGGCAGTTGATCCCCAGGATAGTCAGCGGC
GCAGATGATCTCAGCGCGATGGTGACTCTCCCCCTGTGCCGTATCCTCAATAAAAATGCCACCGGCGCGCTGGTGCTGGA
CAACACCTTTATTCCCACCATTCAGGCCGTCCGTGTCAGCGGGTTGCTCGGGGCATTCTCCGGCGAGGTGCAGGGACTGC
TTGCCACCCGCGCCGCTGACCTGGCCGGGCGCATTGGTTCGCCTGAACAGAGCGGGATCGCCGATGTGGCCGAATTTATG
ATGTTGCAGATGCTTAACCGCTATCAAATGCAGTTCACGCATCGTTCCCAACTGCACACGCTGCATCCGGAAGCCTTCTA
CCGGGATCTGGTGGGGCTGCTGGGAGAACTGATGACCTTTACCGAAGGTAATCGCCTGCCCTGCACCGTGGAGCCGTATA
ATCACCGGGATCTTACCGCGACCTTCACCAGAACCGTGATCCCGGAACTGCGGCGCGCGCTCAATACCGTACTGGTGCCG
CGTGCGCAGAATCTGCCGTTGTTCTTTTCAGAGGGGACCTGGATCGCCACCATCAACGATCCCACATTGTTGCAGTCCTG
CAAGCTGGTACTGGCAGTGCGCGCCAGGATGCCCTACGACCAGGTACAACGCCAGTTCATCCAGCAGTCGAAAGTGGCCG
CTACCGACAAAATCCGCAGCGTGGTCAGCGTGCAGGTGCCGGGTATTCCGCTGCACACGCTTACCGCTGCGCCACGTCAG
TTGCCATACCACGAAGGTTATGTTTACTTCGAACTGGAAAAAGGCACCCCGGCCTGGCAGGACGTGATAAAAGCGGGCGC
ACTGGCGCTGCATATCTCCGGCAGCTTCCCCGATCTGAACCTCCAGCTCTGGGCTATAAGGGGATAA