Detailed information of component protein


Summary

Component ID T6CP012932
Component protein type TssH
T6SS ID (Type) T6SS00937 experimental (Type i1)
Strain Escherichia coli DE719
Replicon chromosome
Sequence Protein sequence (210 a.a.); Nucleotide sequence (630 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) -
Coordinate (Strand) 9115..9744 (-)
NCBI ID 700289662
GenBank KM251715
Uniprot ID A0A097QQS5_ECOLX
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_lid_9 PF17871.3 1.3e-20 7..78

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-209 MNNLTAVLIDDDALQAAATLSERYLSGRQLPDKAIDVLDTACARVAINLSSPPKQISALTTLSHQQEAEIRQLERELRIGLRTDTSRMTEVLEQYDETLSALDELEVAWQQQTLVQEIIALRQQLLGVAEDDVASLPDADAVEDTPPEAEQDSTDAESADDAGSVQPEETAETVSLGTTAGTTHCRTGLPCITTSCWFPRMSIKNRLQR



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9881 - -



  Protein sequence: 210 a.a.    

>T6CP012932 KM251715:c9744-9115 [Escherichia coli] [TssH]
MNNLTAVLIDDDALQAAATLSERYLSGRQLPDKAIDVLDTACARVAINLSSPPKQISALTTLSHQQEAEIRQLERELRIG
LRTDTSRMTEVLEQYDETLSALDELEVAWQQQTLVQEIIALRQQLLGVAEDDVASLPDADAVEDTPPEAEQDSTDAESAD
DAGSVQPEETAETVSLGTTAGTTHCRTGLPCITTSCWFPRMSIKNRLQR*

  Nucleotide sequence: 630 bp    

>T6CP012932 KM251715:c9744-9115 [Escherichia coli] [TssH]
ATGAACAATCTCACGGCAGTGCTGATTGATGATGACGCCTTGCAGGCCGCTGCGACACTGAGCGAGCGTTATCTCTCCGG
GCGTCAGTTGCCGGACAAAGCCATTGATGTGCTGGACACCGCCTGCGCCCGTGTGGCCATCAACCTGTCATCGCCGCCAA
AACAAATCTCGGCACTGACCACCCTGAGCCACCAGCAGGAGGCAGAAATTCGCCAGCTTGAGCGCGAGCTTCGCATCGGG
CTGCGTACCGACACCTCACGAATGACTGAGGTGTTGGAGCAGTATGATGAAACGCTGTCGGCGCTGGACGAACTGGAAGT
CGCCTGGCAGCAGCAGACGCTGGTACAGGAAATTATCGCGCTGCGCCAGCAGTTACTGGGCGTGGCAGAAGACGACGTTG
CGTCGTTGCCGGACGCAGATGCCGTGGAGGATACGCCGCCAGAGGCAGAACAGGATAGTACCGATGCCGAATCGGCTGAT
GATGCAGGCAGCGTACAGCCGGAAGAGACCGCTGAAACAGTTTCCCTCGGTACAACGGCTGGCACAACTCACTGCCGAAC
TGGACTGCCCTGCATAACGACCAGTTGCTGGTTTCCCCGCATGTCGATAAAAAACAGATTGCAGCGGTGA