Detailed information of component protein


Summary

Component ID T6CP012928
Component protein type TssM
T6SS ID (Type) T6SS00937 experimental (Type i1)
Strain Escherichia coli DE719
Replicon chromosome
Sequence Protein sequence (160 a.a.); Nucleotide sequence (480 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) -
Coordinate (Strand) 5416..5895 (-)
NCBI ID 700289657
GenBank KM251715
Uniprot ID A0A097QQS0_ECOLX
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-23 VFKFPTSRLFSTLKSALRPAMPR
Transmembrane helix 24-46 FKVSATWLLTLAWIFLLVWIWWQ
Outside 47-60 GPKWTLYEQHWLAP
Transmembrane helix 61-83 LANRWLATAVWGLIALVWLTWRV
Inside 84-159 MKRLQKLEKQQKQQREEEKDPLTVELHRQQQYLDHWLLRLRRHLDNRRYLWQLPWYMVIGPAGSWQKHAAARGLSV



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9925 - -



  Protein sequence: 160 a.a.    

>T6CP012928 KM251715:c5895-5416 [Escherichia coli] [TssM]
VFKFPTSRLFSTLKSALRPAMPRFKVSATWLLTLAWIFLLVWIWWQGPKWTLYEQHWLAPLANRWLATAVWGLIALVWLT
WRVMKRLQKLEKQQKQQREEEKDPLTVELHRQQQYLDHWLLRLRRHLDNRRYLWQLPWYMVIGPAGSWQKHAAARGLSV*

  Nucleotide sequence: 480 bp    

>T6CP012928 KM251715:c5895-5416 [Escherichia coli] [TssM]
GTGTTCAAATTTCCCACATCCCGACTGTTCAGCACGTTGAAATCTGCGCTCAGGCCAGCGATGCCGCGGTTTAAAGTTTC
CGCCACCTGGCTACTGACGCTGGCATGGATTTTTCTGCTGGTGTGGATCTGGTGGCAGGGTCCAAAATGGACGCTCTATG
AGCAGCACTGGCTGGCTCCGCTGGCAAACCGCTGGCTGGCGACCGCCGTCTGGGGACTTATCGCTCTGGTCTGGCTCACC
TGGCGGGTGATGAAGCGTCTGCAAAAGCTGGAAAAACAGCAGAAACAGCAGCGGGAGGAAGAAAAAGATCCGTTGACCGT
GGAACTCCACCGCCAGCAGCAATATCTGGATCACTGGCTGCTGCGCCTGCGCCGCCATCTGGATAACCGCCGTTATCTGT
GGCAGTTGCCGTGGTATATGGTCATTGGTCCTGCGGGTAGCTGGCAAAAGCACGCTGCTGCGCGAGGGCTTTCCGTCTGA