Detailed information of component protein


Summary

Component ID T6CP012922
Component protein type TssG
T6SS ID (Type) T6SS00928 experimental (Type i1)
Strain Campylobacter jejuni 108
Replicon chromosome
Sequence Protein sequence (303 a.a.); Nucleotide sequence (909 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 13428..14336 (+)
NCBI ID 510027013
GenBank JX436460
Uniprot ID R9TIT3_CAMJU
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 1.1e-46 6..287
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-302 MNNLTSYSFFKLIKKLEKDYGRKNIFLRTNKSLKHPNKDIEKIIFSEHEQSVIELFINFMGLHGVSSQLPSFMLDKLSRNEDGDQGWTLFFDFFNHYLLWIFFDVISLKNYPRSFNENFKDSISKILFSMLGIKEYDIAKKYLPFAPLLLSLRRPKTHIERVLQVNFKLKDKLSIIENLPHQILISNSQKNNLGIKNNILGNNFILGDKFISYQNKIAIYIKDISYQEAVKFMPNGTKHDDLKNSIMFLTNNEFCVDLYLKINYSSEMKFVLGEENTAKLGWAKILGNTQKKYTIVYMKLCE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9959 - -


  Protein sequence: 303 a.a.    

>T6CP012922 JX436460:13428-14336 [Campylobacter jejuni] [TssG]
MNNLTSYSFFKLIKKLEKDYGRKNIFLRTNKSLKHPNKDIEKIIFSEHEQSVIELFINFMGLHGVSSQLPSFMLDKLSRN
EDGDQGWTLFFDFFNHYLLWIFFDVISLKNYPRSFNENFKDSISKILFSMLGIKEYDIAKKYLPFAPLLLSLRRPKTHIE
RVLQVNFKLKDKLSIIENLPHQILISNSQKNNLGIKNNILGNNFILGDKFISYQNKIAIYIKDISYQEAVKFMPNGTKHD
DLKNSIMFLTNNEFCVDLYLKINYSSEMKFVLGEENTAKLGWAKILGNTQKKYTIVYMKLCE*

  Nucleotide sequence: 909 bp    

>T6CP012922 JX436460:13428-14336 [Campylobacter jejuni] [TssG]
ATGAATAATCTTACTTCATATAGTTTTTTTAAATTAATAAAAAAATTAGAAAAAGACTATGGAAGAAAGAATATATTTTT
AAGAACAAATAAAAGTTTAAAACATCCAAATAAAGATATAGAAAAAATCATTTTTTCAGAACACGAACAATCAGTTATAG
AATTGTTTATAAATTTCATGGGGCTACATGGAGTCTCTTCACAACTTCCTTCATTTATGCTAGATAAACTGTCAAGAAAT
GAAGATGGCGATCAAGGTTGGACTCTATTCTTTGATTTCTTTAATCATTATTTGCTTTGGATATTTTTTGATGTAATAAG
CTTAAAAAATTATCCACGATCTTTTAATGAAAATTTTAAAGATTCTATTTCAAAAATTTTATTTAGCATGTTGGGAATTA
AAGAATACGATATTGCAAAAAAATATTTACCATTTGCACCTTTACTACTAAGTTTAAGACGACCTAAAACACACATTGAA
AGAGTTTTACAAGTCAATTTTAAACTTAAGGATAAATTATCAATTATTGAAAATTTACCCCATCAAATTTTAATTTCAAA
TTCGCAAAAAAATAACTTAGGAATAAAGAACAATATTTTAGGAAATAATTTTATATTGGGCGATAAATTTATCTCTTATC
AAAACAAAATAGCGATCTATATAAAGGATATTTCATATCAAGAAGCGGTTAAATTTATGCCCAATGGAACCAAACACGAT
GATTTAAAAAATAGCATAATGTTTTTAACAAATAATGAATTTTGTGTTGATTTATATCTTAAAATCAACTATTCTTCAGA
AATGAAGTTTGTGTTAGGAGAAGAAAATACTGCCAAACTTGGTTGGGCAAAAATTTTAGGTAATACGCAAAAAAAATATA
CAATAGTATATATGAAACTATGTGAATAA