Detailed information of component protein


Summary

Component ID T6CP012921
Component protein type TssF
T6SS ID (Type) T6SS00928 experimental (Type i1)
Strain Campylobacter jejuni 108
Replicon chromosome
Sequence Protein sequence (574 a.a.); Nucleotide sequence (1722 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 11710..13431 (+)
NCBI ID 510027012
GenBank JX436460
Uniprot ID R9TJM9_CAMJU
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 1.5e-114 6..569
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-573 MKDNIFYYQKELEYLYEKREYFIKNYPKLTPFLAYDSIDPDIERIIENLASLSSKIHQELDENIPHIAESLINIVSPNYTNPLPSLCMQEFKFEQNSKENNLIIPKGTLIKSKPIDKCVCEFKTVYDVYLYSISISEVFISSKNQDYTFNLTLQVNKAETKICDLGLEKINLYLGNDTYMSSTLLLYMHSYLKELKIQSLDTDEEFFLNTYNMEKIGLNPDESSLSYNDLGFEAFSLLREYFFMPHKFNFLRINGLDILNNCQGKTINIEFKFSKPFPANCIFRKELLSLSMTPIINIFTKSAEPLINNHKKDSYRIFVDRSQPKAYEIIQTLQVKAHNSEGGKRLLKNYKSFERFEFLKDNQKDFYSVNTKKNSKGEVFSEISFFSSYIMDETISIDLLCSNGDLPSKLKIGDINTCDLKGVDTKNVEIPSETRRCSVDGNLLWKLVSVLSFSYQTILSKKAFFGVLESYSFLDNQSNWKIYKLLQESIIDIQSKSTYLIDENITKKGTLAIFSIKDSKFYTLGEVYLLGLIISKFLASFASINSFCELKIRCLDSKEILHYPASFGKKALI


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9933 - -


  Protein sequence: 574 a.a.    

>T6CP012921 JX436460:11710-13431 [Campylobacter jejuni] [TssF]
MKDNIFYYQKELEYLYEKREYFIKNYPKLTPFLAYDSIDPDIERIIENLASLSSKIHQELDENIPHIAESLINIVSPNYT
NPLPSLCMQEFKFEQNSKENNLIIPKGTLIKSKPIDKCVCEFKTVYDVYLYSISISEVFISSKNQDYTFNLTLQVNKAET
KICDLGLEKINLYLGNDTYMSSTLLLYMHSYLKELKIQSLDTDEEFFLNTYNMEKIGLNPDESSLSYNDLGFEAFSLLRE
YFFMPHKFNFLRINGLDILNNCQGKTINIEFKFSKPFPANCIFRKELLSLSMTPIINIFTKSAEPLINNHKKDSYRIFVD
RSQPKAYEIIQTLQVKAHNSEGGKRLLKNYKSFERFEFLKDNQKDFYSVNTKKNSKGEVFSEISFFSSYIMDETISIDLL
CSNGDLPSKLKIGDINTCDLKGVDTKNVEIPSETRRCSVDGNLLWKLVSVLSFSYQTILSKKAFFGVLESYSFLDNQSNW
KIYKLLQESIIDIQSKSTYLIDENITKKGTLAIFSIKDSKFYTLGEVYLLGLIISKFLASFASINSFCELKIRCLDSKEI
LHYPASFGKKALI*

  Nucleotide sequence: 1722 bp    

>T6CP012921 JX436460:11710-13431 [Campylobacter jejuni] [TssF]
ATGAAGGATAATATTTTTTATTATCAAAAAGAGCTTGAATATCTATATGAAAAAAGAGAGTATTTTATAAAAAATTATCC
AAAGTTAACACCATTTTTGGCATATGATAGCATAGATCCTGATATAGAAAGAATTATTGAAAATTTAGCTAGTTTAAGCT
CTAAAATCCATCAAGAGCTTGATGAAAATATACCACACATTGCAGAATCTTTGATTAATATTGTTTCTCCAAATTATACA
AATCCTTTACCTTCTTTATGCATGCAAGAATTTAAATTTGAACAAAATAGTAAAGAAAATAACTTAATTATTCCCAAAGG
AACTCTTATTAAATCAAAACCAATAGACAAATGTGTTTGTGAATTTAAAACAGTATATGATGTTTATCTTTATTCTATCT
CCATCAGCGAAGTTTTTATATCTAGTAAAAATCAAGATTATACTTTCAATTTAACTTTGCAAGTCAATAAGGCAGAAACA
AAAATATGTGATTTGGGTTTGGAAAAAATTAATTTATATCTAGGCAATGATACCTATATGTCTAGTACTTTATTATTATA
CATGCATTCTTATTTAAAAGAATTAAAAATTCAAAGTTTAGATACTGATGAAGAATTTTTTCTTAATACCTATAATATGG
AAAAAATAGGATTGAATCCAGATGAAAGTAGTTTATCTTATAATGATTTAGGTTTTGAAGCATTTTCCTTACTAAGAGAA
TATTTTTTCATGCCACATAAATTCAATTTTTTAAGAATCAATGGTTTGGATATTTTAAATAATTGTCAAGGAAAGACAAT
TAATATTGAATTTAAATTCTCTAAACCATTTCCTGCAAATTGTATTTTTAGAAAAGAATTACTTTCTTTAAGCATGACAC
CTATTATCAATATCTTTACAAAAAGCGCAGAACCTCTTATAAATAATCACAAAAAAGATAGTTATAGAATTTTTGTGGAT
AGAAGCCAACCTAAAGCTTACGAAATCATACAGACACTACAGGTTAAAGCACATAATAGTGAAGGCGGCAAAAGGTTATT
AAAAAACTATAAAAGTTTTGAACGCTTTGAATTTTTAAAAGATAATCAAAAGGATTTTTATAGCGTAAATACTAAAAAAA
ATTCCAAAGGAGAGGTATTTAGCGAAATTTCTTTCTTTTCCTCTTATATAATGGATGAAACTATAAGTATTGATCTTTTG
TGCTCCAATGGAGATTTACCTTCAAAATTAAAAATAGGTGATATTAATACCTGCGATCTAAAAGGTGTCGATACCAAAAA
TGTGGAAATTCCAAGCGAAACAAGAAGATGTAGTGTTGATGGTAATTTATTATGGAAGCTTGTTTCTGTGTTATCTTTTT
CATATCAAACAATATTGAGCAAAAAAGCTTTTTTTGGTGTGTTGGAAAGCTATAGCTTTTTAGATAATCAATCAAATTGG
AAGATTTATAAGCTTTTGCAAGAATCTATAATCGATATTCAAAGTAAAAGCACTTATTTAATAGATGAAAATATCACAAA
AAAAGGGACCTTAGCTATTTTTAGTATTAAAGATTCGAAGTTTTACACTTTAGGCGAGGTATATTTATTGGGATTGATTA
TATCTAAATTTTTAGCTTCTTTTGCTAGTATTAACTCCTTTTGTGAGTTAAAAATAAGATGCCTCGACTCAAAAGAAATT
TTACATTACCCTGCTTCTTTTGGAAAAAAAGCTTTAATATGA