Detailed information of component protein
Summary
| Component ID | T6CP012920 |
| Component protein type | TssE |
| T6SS ID (Type) | T6SS00928  (Type i1) |
| Strain | Campylobacter jejuni 108 |
| Replicon | chromosome |
| Sequence | Protein sequence (131 a.a.); Nucleotide sequence (393 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | - |
| Coordinate (Strand) | 11321..11713 (+) |
| NCBI ID | 510027011 |
| GenBank | JX436460 |
| Uniprot ID | R9TM59_CAMJU |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GPW_gp25 | PF04965.16 | 5.8e-09 | 26..106 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-130 | MSLLDKLIHNLDEQNIHIPFYQNDFEDVKNNIKVLLNAKINDCYAVKNLGMPNMADINLNSNELCVSMAKEIRKLIDNYEKRICVVSITYDNNLSPWQLSFIVKCFFQDDRFKEFNIEIIFKNNRYCEVK |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9966 | - | - |
Protein sequence: 131 a.a.
>T6CP012920 JX436460:11321-11713 [Campylobacter jejuni] [TssE]
MSLLDKLIHNLDEQNIHIPFYQNDFEDVKNNIKVLLNAKINDCYAVKNLGMPNMADINLNSNELCVSMAKEIRKLIDNYE
KRICVVSITYDNNLSPWQLSFIVKCFFQDDRFKEFNIEIIFKNNRYCEVK*
MSLLDKLIHNLDEQNIHIPFYQNDFEDVKNNIKVLLNAKINDCYAVKNLGMPNMADINLNSNELCVSMAKEIRKLIDNYE
KRICVVSITYDNNLSPWQLSFIVKCFFQDDRFKEFNIEIIFKNNRYCEVK*
Nucleotide sequence: 393 bp
>T6CP012920 JX436460:11321-11713 [Campylobacter jejuni] [TssE]
ATGTCCTTGCTAGATAAACTGATCCATAATTTAGATGAGCAAAACATTCATATTCCATTCTATCAAAATGATTTTGAGGA
TGTAAAAAACAATATAAAGGTTTTGCTCAATGCAAAAATTAATGATTGTTATGCTGTAAAAAATTTAGGAATGCCTAATA
TGGCTGATATTAATCTTAACTCTAATGAATTATGCGTATCAATGGCCAAGGAAATAAGAAAACTAATTGATAACTATGAA
AAAAGAATATGTGTAGTTTCTATCACTTATGATAACAATTTAAGTCCTTGGCAACTTTCTTTTATTGTAAAATGTTTTTT
TCAGGATGATCGTTTTAAAGAATTCAATATAGAAATCATCTTTAAAAACAATAGATATTGCGAGGTTAAATGA
ATGTCCTTGCTAGATAAACTGATCCATAATTTAGATGAGCAAAACATTCATATTCCATTCTATCAAAATGATTTTGAGGA
TGTAAAAAACAATATAAAGGTTTTGCTCAATGCAAAAATTAATGATTGTTATGCTGTAAAAAATTTAGGAATGCCTAATA
TGGCTGATATTAATCTTAACTCTAATGAATTATGCGTATCAATGGCCAAGGAAATAAGAAAACTAATTGATAACTATGAA
AAAAGAATATGTGTAGTTTCTATCACTTATGATAACAATTTAAGTCCTTGGCAACTTTCTTTTATTGTAAAATGTTTTTT
TCAGGATGATCGTTTTAAAGAATTCAATATAGAAATCATCTTTAAAAACAATAGATATTGCGAGGTTAAATGA