Detailed information of component protein
Summary
| Component ID | T6CP012918 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS00928  (Type i1) |
| Strain | Campylobacter jejuni 108 |
| Replicon | chromosome |
| Sequence | Protein sequence (162 a.a.); Nucleotide sequence (486 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | - |
| Coordinate (Strand) | 9377..9862 (+) |
| NCBI ID | AGN32401.1 |
| GenBank | JX436460 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VipA | PF05591.14 | 3.2e-52 | 6..154 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-161 | MSDGSYAPKERINITYKAKTNGQNEDVELPLKLMVMANLKGKNETPLEEREILQINKINFDQVMRKLNITTSFSVKNTLGTGAEELDVKLNIASMKDFSPDSLAKQIPELNKLLQLREALMALKGPMGNIPDFRKAVLEALKNEKTKEKLLLEIKQEEQGN |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9928 | - | - |
Protein sequence: 162 a.a.
>T6CP012918 JX436460:9377-9862 [Campylobacter jejuni] [TssB]
MSDGSYAPKERINITYKAKTNGQNEDVELPLKLMVMANLKGKNETPLEEREILQINKINFDQVMRKLNITTSFSVKNTLG
TGAEELDVKLNIASMKDFSPDSLAKQIPELNKLLQLREALMALKGPMGNIPDFRKAVLEALKNEKTKEKLLLEIKQEEQG
N*
MSDGSYAPKERINITYKAKTNGQNEDVELPLKLMVMANLKGKNETPLEEREILQINKINFDQVMRKLNITTSFSVKNTLG
TGAEELDVKLNIASMKDFSPDSLAKQIPELNKLLQLREALMALKGPMGNIPDFRKAVLEALKNEKTKEKLLLEIKQEEQG
N*
Nucleotide sequence: 486 bp
>T6CP012918 JX436460:9377-9862 [Campylobacter jejuni] [TssB]
ATGTCAGATGGATCTTATGCTCCAAAAGAGCGGATTAATATTACATATAAAGCTAAAACTAATGGACAAAATGAGGATGT
GGAGTTGCCGTTAAAATTAATGGTAATGGCAAATTTAAAAGGAAAAAACGAAACTCCTTTAGAGGAAAGAGAAATTTTGC
AAATTAATAAGATTAATTTTGATCAAGTCATGAGAAAACTCAATATAACAACAAGTTTTAGCGTAAAAAACACTCTTGGA
ACAGGAGCTGAAGAGCTTGATGTTAAGCTCAATATTGCTAGTATGAAGGATTTTTCTCCAGATAGCTTAGCTAAACAAAT
ACCCGAGCTAAACAAATTATTGCAGCTAAGAGAAGCATTAATGGCTTTAAAAGGCCCTATGGGTAATATTCCTGATTTTA
GAAAAGCTGTTTTAGAAGCGTTAAAAAATGAAAAAACTAAAGAAAAATTACTTTTAGAAATTAAACAAGAAGAGCAAGGA
AATTAA
ATGTCAGATGGATCTTATGCTCCAAAAGAGCGGATTAATATTACATATAAAGCTAAAACTAATGGACAAAATGAGGATGT
GGAGTTGCCGTTAAAATTAATGGTAATGGCAAATTTAAAAGGAAAAAACGAAACTCCTTTAGAGGAAAGAGAAATTTTGC
AAATTAATAAGATTAATTTTGATCAAGTCATGAGAAAACTCAATATAACAACAAGTTTTAGCGTAAAAAACACTCTTGGA
ACAGGAGCTGAAGAGCTTGATGTTAAGCTCAATATTGCTAGTATGAAGGATTTTTCTCCAGATAGCTTAGCTAAACAAAT
ACCCGAGCTAAACAAATTATTGCAGCTAAGAGAAGCATTAATGGCTTTAAAAGGCCCTATGGGTAATATTCCTGATTTTA
GAAAAGCTGTTTTAGAAGCGTTAAAAAATGAAAAAACTAAAGAAAAATTACTTTTAGAAATTAAACAAGAAGAGCAAGGA
AATTAA