Detailed information of component protein


Summary

Component ID T6CP012917
Component protein type TssA
T6SS ID (Type) T6SS00928 experimental (Type i1)
Strain Campylobacter jejuni 108
Replicon chromosome
Sequence Protein sequence (416 a.a.); Nucleotide sequence (1248 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 8061..9308 (+)
NCBI ID 510027008
GenBank JX436460
Uniprot ID R9TIS4_CAMJU
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasJ PF16989.7 3.1e-11 176..323
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-415 MYFCDQLKNNLDELQEFQLLEDEMSKYKTLNHENISWDKVYQYSQFILLNHSLDFKICNYFLLSCFNLNNEECFEKLLLLFQHLKKLIDENNAYILAQKRKIQNFIQNFIQEYNKTKVLISSEIVNQFITLFSEFENLLSCNFAKIEIAQVAPQLPKYPVTQVSVNIRSDNINSLNEREYKNFYQKLAFELLEEDENNLNIYALFTQAMWGKIRCLPECNNEKITKIRKPDADIIRILLSDKENDIEHIKCFMHELILNPFWIEGVQLFCDFLEKKKKNKQLDILIILTSDFISKFDTIELLRFQNGDFICKEEVYKYFVKSKENKKSFFSSKKTDKEHTLQDFEQMLMNIDKENFNNSIMNNINSLLDMVKIFESKGMKKNSKILNIYLVELMEKTLLKDYLAEEYENVKSKIK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9895 - -


  Protein sequence: 416 a.a.    

>T6CP012917 JX436460:8061-9308 [Campylobacter jejuni] [TssA]
MYFCDQLKNNLDELQEFQLLEDEMSKYKTLNHENISWDKVYQYSQFILLNHSLDFKICNYFLLSCFNLNNEECFEKLLLL
FQHLKKLIDENNAYILAQKRKIQNFIQNFIQEYNKTKVLISSEIVNQFITLFSEFENLLSCNFAKIEIAQVAPQLPKYPV
TQVSVNIRSDNINSLNEREYKNFYQKLAFELLEEDENNLNIYALFTQAMWGKIRCLPECNNEKITKIRKPDADIIRILLS
DKENDIEHIKCFMHELILNPFWIEGVQLFCDFLEKKKKNKQLDILIILTSDFISKFDTIELLRFQNGDFICKEEVYKYFV
KSKENKKSFFSSKKTDKEHTLQDFEQMLMNIDKENFNNSIMNNINSLLDMVKIFESKGMKKNSKILNIYLVELMEKTLLK
DYLAEEYENVKSKIK*

  Nucleotide sequence: 1248 bp    

>T6CP012917 JX436460:8061-9308 [Campylobacter jejuni] [TssA]
ATGTATTTTTGTGATCAATTGAAAAATAATTTAGATGAACTACAAGAATTTCAGTTACTTGAAGATGAGATGTCAAAATA
TAAGACTTTAAACCATGAAAATATTTCTTGGGATAAAGTTTATCAATATTCTCAGTTTATATTATTAAATCATTCTTTAG
ATTTTAAAATTTGCAACTATTTTCTTTTATCGTGTTTTAATTTAAACAATGAAGAATGCTTTGAAAAGCTTTTGCTTCTT
TTTCAACATTTAAAAAAACTTATAGATGAAAATAATGCTTATATATTAGCTCAAAAGCGAAAAATTCAAAATTTTATTCA
AAATTTTATTCAAGAATACAATAAAACAAAAGTGCTTATATCATCTGAGATTGTTAATCAATTTATTACTTTATTTTCCG
AATTTGAAAATTTACTATCTTGCAATTTTGCAAAAATTGAAATTGCTCAAGTTGCACCACAACTTCCAAAATATCCTGTA
ACTCAAGTATCTGTAAACATTAGAAGCGATAATATTAACTCTTTAAACGAGAGAGAATATAAAAATTTTTATCAAAAACT
TGCATTTGAGCTTTTGGAAGAGGATGAAAATAATCTCAATATCTACGCTTTATTCACCCAAGCAATGTGGGGAAAAATCA
GGTGTTTACCTGAATGTAATAATGAAAAAATTACTAAAATAAGAAAACCTGATGCAGATATAATTCGCATATTACTTTCT
GATAAAGAAAATGATATAGAACATATTAAATGTTTTATGCATGAACTTATTTTAAATCCTTTTTGGATAGAGGGTGTACA
ACTCTTTTGTGATTTTTTAGAAAAAAAGAAAAAAAATAAACAATTAGACATTCTTATAATATTAACAAGTGATTTTATTT
CTAAATTTGATACTATTGAACTTCTCCGTTTTCAAAATGGTGATTTTATCTGCAAAGAAGAAGTTTATAAATATTTTGTT
AAATCCAAAGAAAATAAAAAAAGTTTTTTTTCAAGTAAAAAAACTGACAAAGAACATACATTACAAGATTTTGAGCAAAT
GCTGATGAATATTGATAAAGAAAATTTTAATAATTCTATTATGAATAATATTAATTCCTTGCTAGATATGGTAAAAATTT
TTGAATCAAAAGGAATGAAAAAGAACTCTAAAATTTTAAATATATACTTAGTAGAGTTAATGGAGAAAACTCTACTAAAA
GATTATCTAGCCGAAGAATACGAAAACGTAAAAAGTAAAATTAAGTGA