Detailed information of component protein


Summary

Component ID T6CP012915
Component protein type TssK
T6SS ID (Type) T6SS00928 experimental (Type i1)
Strain Campylobacter jejuni 108
Replicon chromosome
Sequence Protein sequence (466 a.a.); Nucleotide sequence (1398 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 6082..7479 (-)
NCBI ID 510027006
GenBank JX436460
Uniprot ID R9TM49_CAMJU
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 2.4e-113 19..463
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-465 MANKLKVAWFDGLNIGQTHFEQQERFFNRNIDLKTINIYSNLYGIIDLEFSQEMLLQGKIALSKISGIAQDGSIFNAPEQDLLPEPIEINYESLIDSVVVLKIPIGVTDIADLSLRNTFPNSKFICLRNSIALRNYDDSKSNVMDKIEDEYELENLTFTQEKKDLLLASLRLKLGILGNSTPDELELPIAKIKNIDINKKIELESDFIPTCLNISKISTIRSFLEEIIFSINQHKKVLSNVFKGIDQTKNTLDFSTFLSLNLLKKWYLIFSHLSKKDKIHPEFLYEKFLEFQGELAAFSNEESFLDFIPYKHDNLYNTFLNMMNNLRLLFSKITSPKYFIAKTSINGNGFYDFIFDNSGILEESEIYFAIRADVTTEYLLNNFKIQSKIHTQSKIKNIVATQLEGLNVDQVPNVPSSIPYLNGYVYYKLDKRDQLFKDFKNESIISMYLTNNIKNPDIIMWAVFQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9953 - -


  Protein sequence: 466 a.a.    

>T6CP012915 JX436460:c7479-6082 [Campylobacter jejuni] [TssK]
MANKLKVAWFDGLNIGQTHFEQQERFFNRNIDLKTINIYSNLYGIIDLEFSQEMLLQGKIALSKISGIAQDGSIFNAPEQ
DLLPEPIEINYESLIDSVVVLKIPIGVTDIADLSLRNTFPNSKFICLRNSIALRNYDDSKSNVMDKIEDEYELENLTFTQ
EKKDLLLASLRLKLGILGNSTPDELELPIAKIKNIDINKKIELESDFIPTCLNISKISTIRSFLEEIIFSINQHKKVLSN
VFKGIDQTKNTLDFSTFLSLNLLKKWYLIFSHLSKKDKIHPEFLYEKFLEFQGELAAFSNEESFLDFIPYKHDNLYNTFL
NMMNNLRLLFSKITSPKYFIAKTSINGNGFYDFIFDNSGILEESEIYFAIRADVTTEYLLNNFKIQSKIHTQSKIKNIVA
TQLEGLNVDQVPNVPSSIPYLNGYVYYKLDKRDQLFKDFKNESIISMYLTNNIKNPDIIMWAVFQ*

  Nucleotide sequence: 1398 bp    

>T6CP012915 JX436460:c7479-6082 [Campylobacter jejuni] [TssK]
ATGGCAAATAAATTAAAAGTTGCTTGGTTTGATGGACTTAATATTGGACAAACCCATTTTGAGCAGCAAGAAAGATTTTT
TAATAGAAATATAGATCTTAAAACTATAAATATATATAGTAATTTATATGGAATAATAGACTTGGAATTTTCTCAAGAGA
TGTTATTGCAAGGAAAAATTGCACTTTCTAAAATTTCAGGTATCGCACAAGATGGAAGCATTTTTAATGCACCTGAGCAA
GATTTGTTGCCTGAGCCTATTGAAATCAATTATGAATCTTTAATTGATTCAGTTGTGGTATTAAAAATTCCTATCGGAGT
TACTGATATTGCTGATTTATCTTTAAGAAATACTTTTCCAAATTCAAAGTTTATATGTCTTAGAAATAGTATTGCTTTAA
GAAATTATGATGATTCAAAATCTAATGTAATGGACAAAATTGAAGATGAGTACGAACTTGAAAATCTGACTTTTACACAA
GAGAAAAAAGATTTACTTCTTGCTAGTTTAAGATTAAAACTTGGCATTTTAGGTAATTCAACTCCTGATGAACTTGAATT
ACCAATTGCAAAAATTAAAAATATTGATATCAATAAAAAAATTGAATTAGAAAGTGATTTTATACCCACTTGCTTAAATA
TCAGCAAAATATCTACCATAAGATCCTTTTTGGAAGAAATTATTTTTTCAATCAATCAACATAAAAAAGTTCTATCTAAT
GTTTTTAAAGGAATCGATCAAACAAAAAATACATTGGATTTTAGCACTTTTTTATCCCTTAATCTTTTAAAAAAATGGTA
TTTAATATTTTCACATCTATCAAAAAAAGATAAAATACATCCTGAATTTTTATACGAAAAATTTTTAGAATTTCAAGGAG
AGCTTGCAGCTTTTAGCAACGAAGAATCTTTTTTAGATTTTATTCCTTATAAACACGATAATCTTTATAATACTTTTTTA
AATATGATGAATAATCTAAGATTGTTATTTTCTAAAATCACAAGCCCTAAATATTTTATAGCTAAGACCAGTATTAATGG
CAATGGTTTTTATGATTTTATTTTTGATAATTCGGGAATTTTAGAAGAAAGTGAAATTTATTTCGCAATTCGTGCAGATG
TTACTACAGAATATCTACTTAATAATTTTAAAATTCAAAGCAAGATACATACTCAAAGTAAAATTAAAAATATAGTCGCA
ACTCAGCTTGAAGGCTTAAATGTAGATCAAGTACCTAATGTTCCATCTAGCATTCCTTATTTAAATGGTTATGTTTATTA
TAAATTAGATAAAAGAGATCAACTGTTTAAAGATTTTAAAAATGAAAGTATCATTAGTATGTACTTGACCAACAATATAA
AAAACCCTGATATTATAATGTGGGCGGTATTTCAATGA