SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP012913
Component protein type	TssD
T6SS ID (Type)	T6SS00928 (Type i1)
Strain	Campylobacter jejuni 108
Replicon	chromosome
Sequence	Protein sequence (172 a.a.); Nucleotide sequence (516 bp)
Reference	[1] Bleumink-Pluym NM, van Alphen LB, Bouwman LI, et al. Identification of a functional type VI secretion system in Campylobacter jejuni conferring capsule polysaccharide sensitive cytotoxicity. PLoS Pathog. 2013;9(5):e1003393. doi: 10.1371/journal.ppat.1003393. Epub 2013 May 30. PMID: 23737749

Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene)	-
Coordinate (Strand)	4542..5057 (+)
NCBI ID	510027004
GenBank	JX436460
Uniprot ID	R9TLR6_CAMJU
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_HCP	PF05638.14	2.6e-30	6..155

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-171	MAEPAFIKIEGSTQGLISSGASTEASIGNRYKSGHEDEIMAQEVSHIVTVPVDQQSGQPSGQRVHKPFSFTCSLNKSVPLLYNALTKGERLPTVEVHWFRTATSGGSEHFFTTKLEDAIITNIELIMPNAQESSNHDKTELLKVSMSYRKVVWEHTAAGTSGSDDWREGKA

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9544	-	-

Protein sequence: 172 a.a.

						>T6CP012913 JX436460:4542-5057 [Campylobacter jejuni] [TssD]
MAEPAFIKIEGSTQGLISSGASTEASIGNRYKSGHEDEIMAQEVSHIVTVPVDQQSGQPSGQRVHKPFSFTCSLNKSVPL
LYNALTKGERLPTVEVHWFRTATSGGSEHFFTTKLEDAIITNIELIMPNAQESSNHDKTELLKVSMSYRKVVWEHTAAGT
SGSDDWREGKA*					

Nucleotide sequence: 516 bp

						>T6CP012913 JX436460:4542-5057 [Campylobacter jejuni] [TssD]
ATGGCTGAACCAGCGTTTATAAAAATTGAAGGTTCCACACAAGGTTTGATTTCAAGCGGTGCATCTACTGAAGCGAGTAT
TGGCAATAGATATAAATCGGGTCATGAAGATGAAATCATGGCTCAAGAGGTATCTCATATTGTAACCGTACCTGTTGATC
AGCAAAGCGGACAACCTTCTGGACAAAGAGTTCATAAGCCTTTTTCTTTTACTTGCTCATTAAATAAATCTGTGCCTTTG
CTATATAATGCACTTACCAAAGGAGAAAGACTTCCAACAGTCGAAGTTCATTGGTTTAGAACCGCAACAAGTGGCGGATC
TGAACATTTTTTTACTACAAAATTGGAAGATGCAATTATTACAAATATTGAATTAATAATGCCAAATGCGCAAGAGTCAA
GTAATCATGATAAAACCGAGCTTTTAAAAGTTTCAATGAGCTATAGAAAAGTAGTTTGGGAACACACTGCTGCTGGAACT
AGCGGAAGTGATGATTGGAGAGAGGGCAAAGCTTAA					