Detailed information of component protein
Summary
| Component ID | T6CP012839 |
| Component protein type | TagJ |
| T6SS ID (Type) | T6SS00611  (Type i3) |
| Strain | Pseudomonas aeruginosa M18 |
| Replicon | chromosome |
| Sequence | Protein sequence (282 a.a.); Nucleotide sequence (846 bp) |
| Reference |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | PAM18_RS00440 |
| Coordinate (Strand) | 102455..103300 (+) |
| NCBI ID | WP_003119488.1 |
| RefSeq | NC_017548 |
| Uniprot ID | A0A0H2ZK14_PSEAB, TAGJ_PSEAE, A0A6N0KU25_9PSED, A0A2V3DCX1_PSEAI |
| KEGG ID | pau:PA14_01040, pae:PA0086 |
| PDB ID | 4UQZ, 4UQX, 4UQY |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| ImpE | PF07024.15 | 1.5e-43 | 159..274 |
| TPR_19 | PF14559.8 | 2.8e-06 | 26..82 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 282 a.a.
>T6CP012839 NC_017548:102455-103300 [Pseudomonas aeruginosa M18] [TagJ]
MADPSFASGRLGSRLQGSIAMIAEELLRAGRLDDALKALQEQVRSQPSNATLRIFLFQLLAVMGQWARAQNQLKVVGELD
ASALPMVQTYSTAIDCEALRREVFAGRLTPVILGQPAEWIAPLLQALSLDAEGHGEAAQALREQAFDAAPAVPGRIGEAP
FAWLADADTRLGPVLEVIVNGRYAWLPMSNLRSLKVEAPSDLRDLVWLPAELTLANGGATVALLPARYAETVEHGDDAAR
LGRKTEWLDSGLPVGQRLFVTDAGETALFDLRELDFEPTDA*
MADPSFASGRLGSRLQGSIAMIAEELLRAGRLDDALKALQEQVRSQPSNATLRIFLFQLLAVMGQWARAQNQLKVVGELD
ASALPMVQTYSTAIDCEALRREVFAGRLTPVILGQPAEWIAPLLQALSLDAEGHGEAAQALREQAFDAAPAVPGRIGEAP
FAWLADADTRLGPVLEVIVNGRYAWLPMSNLRSLKVEAPSDLRDLVWLPAELTLANGGATVALLPARYAETVEHGDDAAR
LGRKTEWLDSGLPVGQRLFVTDAGETALFDLRELDFEPTDA*
Nucleotide sequence: 846 bp
>T6CP012839 NC_017548:102455-103300 [Pseudomonas aeruginosa M18] [TagJ]
ATGGCCGACCCTTCATTCGCATCCGGGCGCCTGGGCTCCCGGCTACAGGGAAGTATCGCGATGATCGCCGAAGAACTGTT
GCGCGCCGGGCGCCTGGACGATGCCTTGAAAGCCTTGCAGGAACAGGTGCGCAGCCAGCCGTCGAACGCTACCCTGCGGA
TCTTCCTGTTCCAGCTGCTGGCCGTGATGGGCCAGTGGGCGCGGGCGCAGAACCAGCTCAAGGTGGTCGGCGAACTGGAT
GCCTCGGCGCTGCCGATGGTACAGACCTACTCCACCGCCATCGACTGCGAGGCGCTGCGCCGCGAGGTGTTCGCCGGGCG
CCTGACGCCGGTGATCCTCGGCCAGCCGGCGGAATGGATCGCGCCGCTGTTGCAGGCCCTGAGCCTGGACGCCGAAGGCC
ATGGCGAGGCCGCCCAGGCCCTGCGCGAGCAGGCCTTCGACGCCGCGCCGGCGGTGCCCGGGCGGATCGGCGAAGCGCCG
TTCGCCTGGCTGGCGGATGCCGACACGCGCCTCGGCCCGGTGCTCGAGGTAATCGTCAACGGTCGCTATGCCTGGTTGCC
GATGAGCAACCTGCGCAGCCTCAAGGTCGAGGCGCCGAGCGACCTGCGCGACCTGGTCTGGCTGCCGGCCGAACTGACCC
TGGCCAACGGTGGCGCCACCGTCGCGCTGCTGCCGGCGCGCTACGCGGAAACCGTCGAGCACGGCGACGACGCCGCGCGC
CTGGGGCGCAAGACCGAATGGCTGGACAGCGGCCTGCCGGTCGGCCAGCGGCTGTTCGTCACCGATGCCGGCGAGACCGC
GCTGTTCGACCTGCGTGAACTGGACTTCGAGCCGACGGACGCCTGA
ATGGCCGACCCTTCATTCGCATCCGGGCGCCTGGGCTCCCGGCTACAGGGAAGTATCGCGATGATCGCCGAAGAACTGTT
GCGCGCCGGGCGCCTGGACGATGCCTTGAAAGCCTTGCAGGAACAGGTGCGCAGCCAGCCGTCGAACGCTACCCTGCGGA
TCTTCCTGTTCCAGCTGCTGGCCGTGATGGGCCAGTGGGCGCGGGCGCAGAACCAGCTCAAGGTGGTCGGCGAACTGGAT
GCCTCGGCGCTGCCGATGGTACAGACCTACTCCACCGCCATCGACTGCGAGGCGCTGCGCCGCGAGGTGTTCGCCGGGCG
CCTGACGCCGGTGATCCTCGGCCAGCCGGCGGAATGGATCGCGCCGCTGTTGCAGGCCCTGAGCCTGGACGCCGAAGGCC
ATGGCGAGGCCGCCCAGGCCCTGCGCGAGCAGGCCTTCGACGCCGCGCCGGCGGTGCCCGGGCGGATCGGCGAAGCGCCG
TTCGCCTGGCTGGCGGATGCCGACACGCGCCTCGGCCCGGTGCTCGAGGTAATCGTCAACGGTCGCTATGCCTGGTTGCC
GATGAGCAACCTGCGCAGCCTCAAGGTCGAGGCGCCGAGCGACCTGCGCGACCTGGTCTGGCTGCCGGCCGAACTGACCC
TGGCCAACGGTGGCGCCACCGTCGCGCTGCTGCCGGCGCGCTACGCGGAAACCGTCGAGCACGGCGACGACGCCGCGCGC
CTGGGGCGCAAGACCGAATGGCTGGACAGCGGCCTGCCGGTCGGCCAGCGGCTGTTCGTCACCGATGCCGGCGAGACCGC
GCTGTTCGACCTGCGTGAACTGGACTTCGAGCCGACGGACGCCTGA