Detailed information of component protein


Summary

Component ID T6CP012825
Component protein type TagJ
T6SS ID (Type) T6SS00551 experimental (Type i3)
Strain Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
Replicon chromosome
Sequence Protein sequence (275 a.a.); Nucleotide sequence (825 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) STM14_RS01935
Coordinate (Strand) 309813..310637 (-)
NCBI ID WP_000750535.1
RefSeq NC_016856
Uniprot ID A0A5I8HRJ5_SALET, A0A625WLD8_SALEN, A0A5Z5P9N3_SALTM, A0A3V3U6M5_SALET, A0A659NZQ6_SALET, A0A0H3NHP8_SALTS, A0A5J0QS01_SALET, A0A4P9SZB1_SALET, A0A5W7ZBU5_SALDE, A0A0W4EMD0_SALER, A0A2T8QSE0_SALET, A0A315GQ69_SALET, A0A2R4DDB0_SALET, A0A5J1TVH2_SALET, A0A0F6AX71_SALT1, A0A3Z1FPP1_SALET, A0A3V2ZGX6_SALET, A0A0D6HFM2_SALTM, A0A3Z2FCY4_SALTU, Q8ZRL8_SALTY
KEGG ID sej:STMUK_0272, seni:CY43_01355, seo:STM14_0317, sey:SL1344_0264, stm:STM0270
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpE PF07024.15 3.5e-43 145..265
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-274 MKKTDTLPATLSALIQEYSIAEGIQMAEQQVRENPAKALCRHSLFQLLCVAGDWSRALHQLQLCARMEANYTQEARLYRELVRCEMFRHTVFQGEQRPGFLLPQPVWVESLLAALACHDDTGEVDKHRNTALEAITDTGGQWNGGAFDWASDSDSRLGPVLELVTGGVYIWLPFSQIRSLESPQPTRLTDLLWKPVNITLVNGDTHGAWLFTRYSGSESASDALRLCRETAWQDGPGETTVRALGQKVWLTSHGDISLLDMAHCTFHAQENDGA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9059 - -


  Protein sequence: 275 a.a.    

>T6CP012825 NC_016856:c310637-309813 [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] [TagJ]
MKKTDTLPATLSALIQEYSIAEGIQMAEQQVRENPAKALCRHSLFQLLCVAGDWSRALHQLQLCARMEANYTQEARLYRE
LVRCEMFRHTVFQGEQRPGFLLPQPVWVESLLAALACHDDTGEVDKHRNTALEAITDTGGQWNGGAFDWASDSDSRLGPV
LELVTGGVYIWLPFSQIRSLESPQPTRLTDLLWKPVNITLVNGDTHGAWLFTRYSGSESASDALRLCRETAWQDGPGETT
VRALGQKVWLTSHGDISLLDMAHCTFHAQENDGA*

  Nucleotide sequence: 825 bp    

>T6CP012825 NC_016856:c310637-309813 [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] [TagJ]
ATGAAAAAAACTGACACGCTTCCTGCTACCCTGTCCGCGCTGATACAGGAATACTCTATTGCGGAGGGGATTCAGATGGC
GGAGCAGCAGGTTCGGGAAAATCCGGCGAAAGCGCTCTGCCGCCACAGCCTGTTTCAGTTGCTGTGTGTGGCCGGAGACT
GGTCGCGGGCGCTACACCAGCTTCAGCTATGCGCCAGGATGGAGGCCAATTATACCCAGGAGGCCCGGCTGTACCGGGAG
CTGGTTCGCTGCGAAATGTTCCGCCACACCGTTTTTCAGGGTGAACAACGACCCGGTTTTCTTCTGCCGCAGCCCGTTTG
GGTGGAGTCACTGCTGGCGGCACTCGCCTGTCATGACGATACCGGTGAGGTTGATAAACACCGTAATACCGCACTGGAAG
CCATAACAGACACGGGCGGGCAGTGGAACGGCGGCGCATTTGACTGGGCGAGCGACAGCGATTCCCGCCTTGGCCCGGTA
CTTGAGCTAGTCACCGGCGGCGTGTATATCTGGCTGCCGTTTTCGCAAATACGCTCGCTGGAATCGCCGCAACCGACGCG
CCTGACTGATCTGCTGTGGAAACCCGTTAATATCACCCTGGTGAATGGCGATACGCACGGCGCCTGGCTCTTTACCCGTT
ACAGCGGTTCGGAAAGTGCATCCGACGCCCTGCGTCTGTGCAGGGAAACCGCCTGGCAGGACGGCCCCGGCGAAACCACC
GTGCGGGCGCTGGGGCAGAAAGTGTGGCTGACCAGCCACGGCGATATCAGCCTGCTGGACATGGCCCATTGTACCTTTCA
TGCTCAGGAAAACGATGGCGCATGA