Detailed information of component protein


Summary

Component ID T6CP012821
Component protein type TagJ
T6SS ID (Type) T6SS00535 experimental (Type i3)
Strain Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
Replicon chromosome
Sequence Protein sequence (275 a.a.); Nucleotide sequence (825 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) SL1344_RS01365
Coordinate (Strand) 309104..309928 (-)
NCBI ID 446673189
RefSeq NC_016810
Uniprot ID A0A0H3NHP8_SALTS, A0A0W4EMD0_SALER, A0A2T8QSE0_SALET, A0A2R4DDB0_SALET, A0A0F6AX71_SALT1, Q8ZRL8_SALTY
KEGG ID seo:STM14_0317, sey:SL1344_0264, stm:STM0270
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpE PF07024.15 3.5e-43 145..265
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-274 MKKTDTLPATLSALIQEYSIAEGIQMAEQQVRENPAKALCRHSLFQLLCVAGDWSRALHQLQLCARMEANYTQEARLYRELVRCEMFRHTVFQGEQRPGFLLPQPVWVESLLAALACHDDTGEVDKHRNTALEAITDTGGQWNGGAFDWASDSDSRLGPVLELVTGGVYIWLPFSQIRSLESPQPTRLTDLLWKPVNITLVNGDTHGAWLFTRYSGSESASDALRLCRETAWQDGPGETTVRALGQKVWLTSHGDISLLDMAHCTFHAQENDGA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9059 - -


  Protein sequence: 275 a.a.    

>T6CP012821 NC_016810:c309928-309104 [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] [TagJ]
MKKTDTLPATLSALIQEYSIAEGIQMAEQQVRENPAKALCRHSLFQLLCVAGDWSRALHQLQLCARMEANYTQEARLYRE
LVRCEMFRHTVFQGEQRPGFLLPQPVWVESLLAALACHDDTGEVDKHRNTALEAITDTGGQWNGGAFDWASDSDSRLGPV
LELVTGGVYIWLPFSQIRSLESPQPTRLTDLLWKPVNITLVNGDTHGAWLFTRYSGSESASDALRLCRETAWQDGPGETT
VRALGQKVWLTSHGDISLLDMAHCTFHAQENDGA*

  Nucleotide sequence: 825 bp    

>T6CP012821 NC_016810:c309928-309104 [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] [TagJ]
ATGAAAAAAACTGACACGCTTCCTGCTACCCTGTCCGCGCTGATACAGGAATACTCTATTGCGGAGGGGATTCAGATGGC
GGAGCAGCAGGTTCGGGAAAATCCGGCGAAAGCGCTCTGCCGCCACAGCCTGTTTCAGTTGCTGTGTGTGGCCGGAGACT
GGTCGCGGGCGCTACACCAGCTTCAGCTATGCGCCAGGATGGAGGCCAATTATACCCAGGAGGCCCGGCTGTACCGGGAG
CTGGTTCGCTGCGAAATGTTCCGCCACACCGTTTTTCAGGGTGAACAACGACCCGGTTTTCTTCTGCCGCAGCCCGTTTG
GGTGGAGTCACTGCTGGCGGCACTCGCCTGTCATGACGATACCGGTGAGGTTGATAAACACCGTAATACCGCACTGGAAG
CCATAACAGACACGGGCGGGCAGTGGAACGGCGGCGCATTTGACTGGGCGAGCGACAGCGATTCCCGCCTTGGCCCGGTA
CTTGAGCTAGTCACCGGCGGCGTGTATATCTGGCTGCCGTTTTCGCAAATACGCTCGCTGGAATCGCCGCAACCGACGCG
CCTGACTGATCTGCTGTGGAAACCCGTTAATATCACCCTGGTGAATGGCGATACGCACGGCGCCTGGCTCTTTACCCGTT
ACAGCGGTTCGGAAAGTGCATCCGACGCCCTGCGTCTGTGCAGGGAAACCGCCTGGCAGGACGGCCCCGGCGAAACCACC
GTGCGGGCGCTGGGGCAGAAAGTGTGGCTGACCAGCCACGGCGATATCAGCCTGCTGGACATGGCCCATTGTACCTTTCA
TGCTCAGGAAAACGATGGCGCATGA