Detailed information of component protein


Summary

Component ID T6CP012755
Component protein type TagJ
T6SS ID (Type) T6SS00258 experimental (Type i3)
Strain Yersinia pseudotuberculosis YPIII
Replicon chromosome
Sequence Protein sequence (269 a.a.); Nucleotide sequence (807 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPK_RS07515
Coordinate (Strand) 1652021..1652827 (+)
NCBI ID WP_012303911.1
RefSeq NC_010465
Uniprot ID A0A0H3B2I6_YERPY
KEGG ID ypy:YPK_1489
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpE PF07024.15 3.2e-41 145..261
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-268 MNTTNLTELLKSASLTEMLADVIATIKAKPTDTDTRELLFKLYCIDGSWQKALLQLETLTQLLPEFTKQAELYKNLILSEKMRDEVLAGKRSPGTLGNDLPEWVALLQQANQLHHDGDHQQSEALREQALQQAPESIGESAATGCFAWIADSDGRMGPVCEFISAGGYRWVPFAEIQSLTVSKPKNITDLIWAPAQVKVKDKVWYGYIPARYPLTPETDNETKLGLKTEWHQPTDSLYIGAGRKMFITDQGEHALFDIEEIVFEIDCI


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9731 - -


  Protein sequence: 269 a.a.    

>T6CP012755 NC_010465:1652021-1652827 [Yersinia pseudotuberculosis YPIII] [TagJ]
MNTTNLTELLKSASLTEMLADVIATIKAKPTDTDTRELLFKLYCIDGSWQKALLQLETLTQLLPEFTKQAELYKNLILSE
KMRDEVLAGKRSPGTLGNDLPEWVALLQQANQLHHDGDHQQSEALREQALQQAPESIGESAATGCFAWIADSDGRMGPVC
EFISAGGYRWVPFAEIQSLTVSKPKNITDLIWAPAQVKVKDKVWYGYIPARYPLTPETDNETKLGLKTEWHQPTDSLYIG
AGRKMFITDQGEHALFDIEEIVFEIDCI*

  Nucleotide sequence: 807 bp    

>T6CP012755 NC_010465:1652021-1652827 [Yersinia pseudotuberculosis YPIII] [TagJ]
ATGAATACCACGAATTTAACTGAGTTATTAAAAAGCGCGTCTTTAACCGAAATGCTGGCCGATGTCATTGCTACGATAAA
AGCTAAACCAACGGATACCGATACGCGAGAACTGTTATTCAAACTCTATTGTATTGATGGTTCATGGCAAAAAGCCCTAT
TGCAGCTTGAAACATTGACACAGCTTTTACCTGAGTTCACCAAACAGGCTGAACTCTATAAAAATCTGATATTGAGTGAG
AAAATGCGTGATGAAGTACTGGCAGGCAAACGCAGCCCTGGTACGTTGGGTAACGACCTGCCTGAATGGGTAGCCTTGTT
GCAACAAGCTAATCAACTCCACCATGATGGCGATCATCAGCAAAGTGAGGCCCTCCGTGAACAGGCTCTGCAACAGGCAC
CGGAAAGTATCGGAGAGAGCGCTGCGACAGGCTGCTTCGCTTGGATTGCTGACAGTGATGGGCGTATGGGGCCTGTTTGT
GAGTTTATTAGCGCCGGCGGTTACCGTTGGGTCCCGTTTGCAGAGATACAATCACTCACTGTTTCCAAACCTAAAAATAT
TACAGACCTGATATGGGCGCCGGCACAGGTTAAAGTAAAGGATAAAGTTTGGTACGGTTATATACCTGCCCGCTATCCAC
TGACACCTGAAACAGACAATGAAACTAAACTGGGTCTTAAAACAGAATGGCATCAACCGACTGACTCACTTTATATTGGG
GCAGGGCGGAAAATGTTTATCACCGACCAAGGTGAGCATGCGCTGTTTGATATTGAAGAGATTGTATTTGAGATAGATTG
TATTTGA