Detailed information of component protein
Summary
External database links
Locus tag (Gene) | BTH_RS00705 |
Coordinate (Strand) | 164590..165396 (-) |
NCBI ID | WP_009894758.1 |
RefSeq | NC_007650 |
Uniprot ID | - |
KEGG ID | - |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
ImpE | PF07024.15 | 2.3e-40 | 140..257 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-268 | MLHDALRTQSFEEIKARTAEAVRKKPSDTRERWLLFQLLCIDGAWDRALKQLQTWAQLEPQGEARAQLHRGLIRCEMFRADVFAGKRTPGFIDAQPAWVDTLLEANAKLGAGDVAAADALRESAFDSAPVTCGESAEMGSFAWLTDSDTRLGPIFEIAVAGGYRWIPFEQLKSITFTPAGTLTDLVWRPVTALMLDATVLRGYAPTRYPGSENGTTAIRLASETTWSDIGTTNVVALGQRTWTTDQGDWGMLQIGGCRFTGESDDAAS |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9916 | - | - |
Protein sequence: 269 a.a.
>T6CP012722 NC_007650:c165396-164590 [Burkholderia thailandensis E264] [TagJ]
MLHDALRTQSFEEIKARTAEAVRKKPSDTRERWLLFQLLCIDGAWDRALKQLQTWAQLEPQGEARAQLHRGLIRCEMFRA
DVFAGKRTPGFIDAQPAWVDTLLEANAKLGAGDVAAADALRESAFDSAPVTCGESAEMGSFAWLTDSDTRLGPIFEIAVA
GGYRWIPFEQLKSITFTPAGTLTDLVWRPVTALMLDATVLRGYAPTRYPGSENGTTAIRLASETTWSDIGTTNVVALGQR
TWTTDQGDWGMLQIGGCRFTGESDDAAS*
MLHDALRTQSFEEIKARTAEAVRKKPSDTRERWLLFQLLCIDGAWDRALKQLQTWAQLEPQGEARAQLHRGLIRCEMFRA
DVFAGKRTPGFIDAQPAWVDTLLEANAKLGAGDVAAADALRESAFDSAPVTCGESAEMGSFAWLTDSDTRLGPIFEIAVA
GGYRWIPFEQLKSITFTPAGTLTDLVWRPVTALMLDATVLRGYAPTRYPGSENGTTAIRLASETTWSDIGTTNVVALGQR
TWTTDQGDWGMLQIGGCRFTGESDDAAS*
Nucleotide sequence: 807 bp
>T6CP012722 NC_007650:c165396-164590 [Burkholderia thailandensis E264] [TagJ]
ATGCTGCACGACGCGCTGCGCACCCAGTCTTTCGAGGAAATCAAGGCGCGCACGGCCGAAGCGGTCCGCAAGAAGCCATC
CGACACGCGGGAACGCTGGCTATTGTTTCAATTGCTTTGCATCGACGGCGCATGGGACCGCGCGCTCAAGCAACTGCAGA
CCTGGGCGCAACTCGAGCCGCAGGGCGAGGCGCGTGCGCAACTGCATCGCGGCCTGATCCGATGCGAAATGTTCCGGGCC
GACGTGTTTGCGGGCAAGCGAACGCCGGGATTCATCGACGCGCAGCCCGCTTGGGTCGATACGCTCCTCGAAGCGAATGC
GAAGCTCGGCGCGGGCGACGTCGCAGCCGCCGATGCGCTGCGCGAGTCCGCGTTCGATTCCGCGCCCGTCACCTGCGGGG
AAAGCGCCGAAATGGGCAGCTTCGCATGGCTCACCGACAGCGACACGCGTCTCGGTCCGATATTCGAAATAGCGGTTGCG
GGCGGCTATCGGTGGATTCCGTTCGAACAGCTGAAGTCGATCACGTTTACGCCCGCCGGCACGCTGACCGACCTGGTCTG
GCGTCCGGTCACGGCGCTCATGCTCGATGCCACGGTTCTCCGCGGCTATGCGCCGACCCGCTATCCGGGATCGGAAAACG
GCACGACCGCAATCCGTCTGGCGAGCGAGACGACGTGGAGTGACATCGGCACCACCAACGTCGTCGCTCTCGGGCAACGA
ACGTGGACCACCGACCAGGGCGACTGGGGCATGCTCCAGATCGGCGGATGCCGCTTCACGGGCGAAAGCGACGATGCGGC
ATCCTGA
ATGCTGCACGACGCGCTGCGCACCCAGTCTTTCGAGGAAATCAAGGCGCGCACGGCCGAAGCGGTCCGCAAGAAGCCATC
CGACACGCGGGAACGCTGGCTATTGTTTCAATTGCTTTGCATCGACGGCGCATGGGACCGCGCGCTCAAGCAACTGCAGA
CCTGGGCGCAACTCGAGCCGCAGGGCGAGGCGCGTGCGCAACTGCATCGCGGCCTGATCCGATGCGAAATGTTCCGGGCC
GACGTGTTTGCGGGCAAGCGAACGCCGGGATTCATCGACGCGCAGCCCGCTTGGGTCGATACGCTCCTCGAAGCGAATGC
GAAGCTCGGCGCGGGCGACGTCGCAGCCGCCGATGCGCTGCGCGAGTCCGCGTTCGATTCCGCGCCCGTCACCTGCGGGG
AAAGCGCCGAAATGGGCAGCTTCGCATGGCTCACCGACAGCGACACGCGTCTCGGTCCGATATTCGAAATAGCGGTTGCG
GGCGGCTATCGGTGGATTCCGTTCGAACAGCTGAAGTCGATCACGTTTACGCCCGCCGGCACGCTGACCGACCTGGTCTG
GCGTCCGGTCACGGCGCTCATGCTCGATGCCACGGTTCTCCGCGGCTATGCGCCGACCCGCTATCCGGGATCGGAAAACG
GCACGACCGCAATCCGTCTGGCGAGCGAGACGACGTGGAGTGACATCGGCACCACCAACGTCGTCGCTCTCGGGCAACGA
ACGTGGACCACCGACCAGGGCGACTGGGGCATGCTCCAGATCGGCGGATGCCGCTTCACGGGCGAAAGCGACGATGCGGC
ATCCTGA