Detailed information of component protein
Summary
| Component ID | T6CP012593 |
| Component protein type | PppA |
| T6SS ID (Type) | T6SS00764  (Type i3) |
| Strain | Pseudomonas protegens CHA0 |
| Replicon | chromosome |
| Sequence | Protein sequence (245 a.a.); Nucleotide sequence (735 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | PFLCHA0_RS30110 |
| Coordinate (Strand) | 6696596..6697330 (-) |
| NCBI ID | WP_011064247.1 |
| RefSeq | NC_021237 |
| Uniprot ID | A0A2C9EVQ5_PSEPH, A0A1K2AB20_9PSED, A0A2T0Z775_9PSED, Q4K3P6_PSEF5 |
| KEGG ID | pprc:PFLCHA0_c60380, pfl:PFL_6079 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| PP2C_2 | PF13672.8 | 2.7e-11 | 22..212 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-244 | MRSAPQLSYQSASYSHVGMVRKINEDAWLEAPETGLWLVADGMGGHAAGDYVSSLIVDSLRAVPAADSLDDYVAALRNGLAAVNAAVREETANRGVTMMGSTVVLLAVRGARAVCLWAGDSRLYRLRDEQLEGISRDHSYVQDLQDSGLLSEAEARVHPRANIVTRAIGVEAQLELSQIDLQVQDGDTFLLCSDGLNKTAEDFELRDVLSHSEPNDVVRSLIHLGLTRGAPDNITAIVIKAAGH |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9830 | - | - |
Protein sequence: 245 a.a.
>T6CP012593 NC_021237:c6697330-6696596 [Pseudomonas protegens CHA0] [PppA]
MRSAPQLSYQSASYSHVGMVRKINEDAWLEAPETGLWLVADGMGGHAAGDYVSSLIVDSLRAVPAADSLDDYVAALRNGL
AAVNAAVREETANRGVTMMGSTVVLLAVRGARAVCLWAGDSRLYRLRDEQLEGISRDHSYVQDLQDSGLLSEAEARVHPR
ANIVTRAIGVEAQLELSQIDLQVQDGDTFLLCSDGLNKTAEDFELRDVLSHSEPNDVVRSLIHLGLTRGAPDNITAIVIK
AAGH*
MRSAPQLSYQSASYSHVGMVRKINEDAWLEAPETGLWLVADGMGGHAAGDYVSSLIVDSLRAVPAADSLDDYVAALRNGL
AAVNAAVREETANRGVTMMGSTVVLLAVRGARAVCLWAGDSRLYRLRDEQLEGISRDHSYVQDLQDSGLLSEAEARVHPR
ANIVTRAIGVEAQLELSQIDLQVQDGDTFLLCSDGLNKTAEDFELRDVLSHSEPNDVVRSLIHLGLTRGAPDNITAIVIK
AAGH*
Nucleotide sequence: 735 bp
>T6CP012593 NC_021237:c6697330-6696596 [Pseudomonas protegens CHA0] [PppA]
ATGCGTTCAGCGCCGCAACTGTCCTACCAGTCCGCCAGCTACAGCCATGTCGGCATGGTGCGGAAAATCAATGAAGACGC
CTGGCTCGAAGCCCCGGAGACCGGCCTGTGGCTGGTGGCCGACGGTATGGGCGGGCACGCCGCCGGGGACTATGTCAGCA
GCCTGATCGTCGACAGCCTGCGGGCGGTTCCGGCCGCCGACAGCCTGGACGACTATGTCGCCGCGCTGCGCAACGGCCTG
GCCGCGGTCAACGCCGCGGTGCGCGAGGAAACCGCCAACCGTGGGGTGACCATGATGGGCAGCACTGTGGTGCTGCTGGC
GGTACGCGGGGCCCGGGCCGTGTGCCTGTGGGCCGGCGATAGCCGCCTGTACCGGTTGCGGGACGAACAGCTGGAAGGCA
TTTCCCGGGACCACAGCTACGTCCAGGACCTGCAGGACAGCGGCCTGCTCAGCGAGGCCGAGGCGCGGGTGCACCCGCGG
GCCAACATCGTGACCCGGGCGATTGGCGTCGAGGCCCAGCTGGAGCTGTCCCAGATTGACCTGCAGGTGCAGGACGGCGA
CACCTTCCTGCTGTGCAGCGACGGCCTGAACAAGACCGCCGAGGACTTTGAGCTGCGTGACGTGCTCAGCCACAGCGAGC
CCAATGACGTGGTGCGCAGCCTGATCCACCTGGGCCTGACCCGGGGCGCTCCGGACAACATCACCGCCATCGTGATCAAG
GCCGCAGGACACTGA
ATGCGTTCAGCGCCGCAACTGTCCTACCAGTCCGCCAGCTACAGCCATGTCGGCATGGTGCGGAAAATCAATGAAGACGC
CTGGCTCGAAGCCCCGGAGACCGGCCTGTGGCTGGTGGCCGACGGTATGGGCGGGCACGCCGCCGGGGACTATGTCAGCA
GCCTGATCGTCGACAGCCTGCGGGCGGTTCCGGCCGCCGACAGCCTGGACGACTATGTCGCCGCGCTGCGCAACGGCCTG
GCCGCGGTCAACGCCGCGGTGCGCGAGGAAACCGCCAACCGTGGGGTGACCATGATGGGCAGCACTGTGGTGCTGCTGGC
GGTACGCGGGGCCCGGGCCGTGTGCCTGTGGGCCGGCGATAGCCGCCTGTACCGGTTGCGGGACGAACAGCTGGAAGGCA
TTTCCCGGGACCACAGCTACGTCCAGGACCTGCAGGACAGCGGCCTGCTCAGCGAGGCCGAGGCGCGGGTGCACCCGCGG
GCCAACATCGTGACCCGGGCGATTGGCGTCGAGGCCCAGCTGGAGCTGTCCCAGATTGACCTGCAGGTGCAGGACGGCGA
CACCTTCCTGCTGTGCAGCGACGGCCTGAACAAGACCGCCGAGGACTTTGAGCTGCGTGACGTGCTCAGCCACAGCGAGC
CCAATGACGTGGTGCGCAGCCTGATCCACCTGGGCCTGACCCGGGGCGCTCCGGACAACATCACCGCCATCGTGATCAAG
GCCGCAGGACACTGA