Detailed information of component protein


Summary

Component ID T6CP012592
Component protein type PpkA
T6SS ID (Type) T6SS00764 experimental (Type i3)
Strain Pseudomonas protegens CHA0
Replicon chromosome
Sequence Protein sequence (1028 a.a.); Nucleotide sequence (3084 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) PFLCHA0_RS30105
Coordinate (Strand) 6693510..6696593 (-)
NCBI ID WP_015637479.1
RefSeq NC_021237
Uniprot ID A0A2C9EVS5_PSEPH
KEGG ID pprc:PFLCHA0_c60370
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Pkinase PF00069.27 2.4e-47 10..249
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-1027 MDILIPGFDIQGEIGEGAMASVYLATQRSLERKVALKVMAAALAADPSFCERFLREGKTLARLSHPHTVTIHDIGNVGELYYMAMEYLPNGTLKERIAAGLTPEQGLTYIRQIASALGYAHAQGLVHRDVKPANILFRADGTAVLSDFGIAKSLDDRTQFTQAGFAVGTPSYMSPEQARGQDIDGRADLYALGVVLYEILVGELPYNGTDALSTALAHLTEPLPELPLHHGRYQHILRKLLAKDPAERYPDAAALLAALDNLPAATAEVEATLIQPLPLPPQAASQPVPQGNDLAGLTPVSIEIPQQAPRPAPRREPPEEPPAPPRTANLPPAGSGPSEQRRGPVLALAGVAVAVALAVAGAGYWWLSGDSPAPEPKTASTAGTTPAVVAPPASQPVAADVDGGQRPLLMPGKKTLFQRVLSKPGASFSSEPGAAPGQAVPAFSVLYVYQRKNLDGRSWLRLGAASDGRSAGWLPAEQVSDWKQSLVLKFTERSGRAPVMFVRQASELERLLADPAAAKNLLLKAQKNPQDEQQVLALEPNASAVPQDQFYLLPIFDSKESFDDNGQPVQLLNVASIDPGNSPQSISDSSGKRLPANTPPAAGDAFRTAVVLVVDTSVSMQPYIDQVRDVVHELQSKIAQRGELDSVSFGLVGFRNNTSKTPGLEYVTKTLVTLDQGRDPQRFQELVSQVKATSVSSHSFNEDAFAGVMQAVEGMDWKGYGGRLILLVSDAGALRKNDPYSRTQMNEAEVRQAALGKQIKIYALHLRTDAGKKNHAQAETQYRVLTADANPKIGDLYIPVPGGDVGKFGERVDEIGTVFADLVHQVRSNQSQEVPVLAAAPSITQKSAAIGYAMHMDFLGRKSASQAPQLVSAWTADRDLTNPALPAFQVCVMLTKLQLNDLQQSLKLIVDAARKTQTSPKDFFQEIASASAYMSRDPSALRKGGNLADGGVLGEYLEGLPYRSKSLNMTQDLWLSLSVAEQEDFIDELDSKIRLYETFHNDLANWVRFGDAEPGDALYRVPLSTLP


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9144 - -


  Protein sequence: 1028 a.a.    

>T6CP012592 NC_021237:c6696593-6693510 [Pseudomonas protegens CHA0] [PpkA]
MDILIPGFDIQGEIGEGAMASVYLATQRSLERKVALKVMAAALAADPSFCERFLREGKTLARLSHPHTVTIHDIGNVGEL
YYMAMEYLPNGTLKERIAAGLTPEQGLTYIRQIASALGYAHAQGLVHRDVKPANILFRADGTAVLSDFGIAKSLDDRTQF
TQAGFAVGTPSYMSPEQARGQDIDGRADLYALGVVLYEILVGELPYNGTDALSTALAHLTEPLPELPLHHGRYQHILRKL
LAKDPAERYPDAAALLAALDNLPAATAEVEATLIQPLPLPPQAASQPVPQGNDLAGLTPVSIEIPQQAPRPAPRREPPEE
PPAPPRTANLPPAGSGPSEQRRGPVLALAGVAVAVALAVAGAGYWWLSGDSPAPEPKTASTAGTTPAVVAPPASQPVAAD
VDGGQRPLLMPGKKTLFQRVLSKPGASFSSEPGAAPGQAVPAFSVLYVYQRKNLDGRSWLRLGAASDGRSAGWLPAEQVS
DWKQSLVLKFTERSGRAPVMFVRQASELERLLADPAAAKNLLLKAQKNPQDEQQVLALEPNASAVPQDQFYLLPIFDSKE
SFDDNGQPVQLLNVASIDPGNSPQSISDSSGKRLPANTPPAAGDAFRTAVVLVVDTSVSMQPYIDQVRDVVHELQSKIAQ
RGELDSVSFGLVGFRNNTSKTPGLEYVTKTLVTLDQGRDPQRFQELVSQVKATSVSSHSFNEDAFAGVMQAVEGMDWKGY
GGRLILLVSDAGALRKNDPYSRTQMNEAEVRQAALGKQIKIYALHLRTDAGKKNHAQAETQYRVLTADANPKIGDLYIPV
PGGDVGKFGERVDEIGTVFADLVHQVRSNQSQEVPVLAAAPSITQKSAAIGYAMHMDFLGRKSASQAPQLVSAWTADRDL
TNPALPAFQVCVMLTKLQLNDLQQSLKLIVDAARKTQTSPKDFFQEIASASAYMSRDPSALRKGGNLADGGVLGEYLEGL
PYRSKSLNMTQDLWLSLSVAEQEDFIDELDSKIRLYETFHNDLANWVRFGDAEPGDALYRVPLSTLP*

  Nucleotide sequence: 3084 bp    

>T6CP012592 NC_021237:c6696593-6693510 [Pseudomonas protegens CHA0] [PpkA]
ATGGACATTCTGATTCCCGGCTTTGACATCCAGGGCGAAATTGGCGAAGGCGCCATGGCCAGCGTGTACCTGGCGACCCA
GCGTTCCCTGGAACGCAAGGTGGCACTCAAGGTGATGGCCGCGGCGCTGGCCGCCGACCCGAGCTTCTGCGAGCGCTTCC
TGCGCGAGGGCAAGACCCTGGCGCGGCTGTCGCACCCGCACACCGTGACCATCCACGACATCGGCAATGTCGGCGAGCTG
TACTACATGGCCATGGAGTACCTGCCCAACGGCACGCTGAAAGAGCGCATCGCCGCCGGGCTGACCCCGGAGCAGGGCCT
GACCTATATCCGCCAGATCGCCTCGGCCCTGGGCTATGCCCATGCCCAGGGGCTGGTACACCGCGATGTGAAGCCGGCCA
ACATCCTGTTCCGCGCCGACGGCACCGCGGTGCTCTCGGACTTCGGCATCGCCAAGTCCCTGGACGACCGCACCCAGTTC
ACCCAGGCCGGTTTTGCCGTAGGCACCCCGAGCTACATGAGCCCCGAACAGGCTCGTGGCCAGGACATCGACGGCCGCGC
CGACCTCTATGCCCTGGGGGTGGTGCTGTATGAAATCCTGGTGGGCGAGCTGCCTTACAACGGCACCGACGCGCTGTCCA
CAGCCCTGGCCCACCTGACCGAGCCGCTGCCGGAGCTGCCGCTGCACCACGGTCGCTACCAGCACATCCTGCGCAAGCTG
CTGGCCAAGGACCCGGCCGAGCGCTACCCGGATGCCGCCGCCTTGCTGGCGGCCCTGGACAACCTGCCGGCCGCCACCGC
CGAGGTGGAAGCGACGCTGATCCAGCCCTTGCCGCTGCCACCCCAGGCTGCGTCGCAGCCTGTACCTCAGGGCAACGACC
TGGCCGGGCTGACCCCGGTGTCCATCGAGATCCCGCAGCAGGCGCCCCGACCGGCGCCGCGCCGCGAGCCGCCCGAGGAG
CCGCCCGCGCCGCCGCGCACGGCCAATCTGCCGCCAGCCGGCAGCGGGCCTTCCGAACAGCGGCGCGGCCCAGTGCTGGC
CCTGGCTGGGGTCGCCGTGGCGGTGGCCCTGGCAGTGGCGGGCGCCGGTTATTGGTGGCTGTCGGGCGACAGCCCGGCGC
CAGAACCCAAGACCGCCTCGACAGCCGGCACCACGCCTGCGGTGGTGGCGCCCCCGGCCAGTCAGCCGGTGGCCGCGGAT
GTCGACGGCGGCCAGCGACCGCTGCTGATGCCGGGCAAGAAAACCTTGTTCCAGCGGGTGCTGAGCAAGCCAGGGGCGAG
TTTCTCCAGCGAGCCTGGGGCTGCGCCGGGCCAGGCGGTGCCGGCGTTCTCGGTGCTCTACGTGTATCAGCGCAAGAACC
TCGACGGCCGCTCCTGGCTGCGCCTGGGGGCCGCCAGTGACGGTCGCAGCGCCGGCTGGTTGCCGGCCGAACAGGTCAGC
GACTGGAAGCAGAGCCTGGTGCTGAAATTCACCGAGCGTTCCGGTCGTGCACCGGTGATGTTCGTGCGTCAGGCCAGCGA
GCTGGAGCGTTTGTTGGCGGACCCTGCGGCGGCCAAGAACCTGCTGCTCAAGGCACAGAAGAACCCCCAGGACGAACAGC
AGGTGCTGGCCCTGGAACCCAACGCCAGCGCGGTGCCACAGGACCAGTTCTACCTGCTGCCGATCTTCGATTCCAAGGAG
AGTTTCGACGACAACGGCCAGCCGGTGCAGTTGCTCAATGTGGCTTCCATCGACCCGGGCAACAGCCCGCAGAGCATCAG
TGACAGTAGCGGCAAGCGCCTGCCGGCCAATACTCCTCCGGCGGCCGGCGATGCCTTCCGCACTGCGGTGGTGCTGGTGG
TGGACACCTCGGTGTCGATGCAGCCCTACATCGACCAGGTGCGCGATGTGGTGCACGAGCTGCAAAGCAAGATCGCCCAG
CGCGGCGAGCTGGACAGCGTCAGCTTCGGCCTGGTGGGCTTTCGCAACAACACCAGCAAGACCCCGGGCCTGGAGTACGT
GACCAAGACCCTGGTGACCCTGGACCAGGGTCGCGATCCCCAGCGCTTCCAGGAGCTGGTGAGCCAGGTCAAGGCCACCA
GTGTCTCCAGCCATTCGTTCAACGAAGACGCCTTTGCCGGCGTGATGCAGGCCGTGGAGGGCATGGACTGGAAGGGCTAT
GGCGGCCGCCTGATCCTGCTGGTCAGCGATGCCGGGGCGCTGCGCAAGAACGACCCTTACAGCCGCACCCAGATGAACGA
GGCGGAAGTGCGCCAGGCAGCCCTGGGCAAGCAGATCAAGATCTACGCCCTGCACCTGCGTACCGATGCCGGCAAGAAGA
ACCACGCCCAGGCGGAAACCCAGTACCGGGTGCTGACCGCCGACGCCAACCCGAAGATCGGCGACCTGTACATTCCGGTG
CCCGGTGGCGATGTGGGCAAGTTCGGCGAGCGGGTCGACGAGATCGGCACGGTGTTCGCCGACCTGGTGCATCAGGTGCG
CAGCAACCAGAGCCAGGAAGTCCCGGTGCTGGCGGCGGCGCCGAGCATCACGCAGAAGTCGGCGGCCATCGGCTACGCCA
TGCACATGGATTTCCTCGGCCGCAAGTCCGCCAGCCAGGCGCCCCAGCTAGTCAGCGCCTGGACCGCCGACCGCGACCTG
ACCAACCCGGCGCTGCCGGCGTTCCAGGTCTGTGTGATGCTCACCAAGCTGCAACTCAACGACTTGCAGCAGTCGCTGAA
ACTGATCGTCGACGCGGCGCGCAAGACCCAGACCTCGCCCAAGGATTTCTTCCAGGAAATCGCCAGCGCCAGTGCCTACA
TGAGCCGCGACCCGTCGGCCCTGCGCAAGGGCGGCAACCTGGCCGACGGCGGCGTGCTGGGGGAATACCTGGAAGGCCTG
CCGTACCGCAGCAAGTCGCTGAACATGACCCAGGACCTGTGGCTGTCCCTGAGCGTGGCCGAGCAGGAAGACTTCATCGA
CGAGCTGGATTCGAAGATCCGCCTCTACGAAACCTTCCATAACGATCTGGCCAACTGGGTGCGCTTCGGTGATGCCGAGC
CGGGTGATGCCCTGTACCGCGTTCCGTTGTCGACCCTGCCGTGA