Detailed information of component protein


Summary

Component ID T6CP012534
Component protein type Sfa3
T6SS ID (Type) T6SS00612 insolico (Type i4a)
Strain Pseudomonas aeruginosa M18
Replicon chromosome
Sequence Protein sequence (362 a.a.); Nucleotide sequence (1086 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PAM18_RS13795
Coordinate (Strand) 2986512..2987597 (+)
NCBI ID WP_012614153.1
RefSeq NC_017548
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Sigma54_activat PF00158.28 5.5e-68 22..188
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 362 a.a.    

>T6CP012534 NC_017548:2986512-2987597 [Pseudomonas aeruginosa M18] [Sfa3]
MSVITHPHARELTKSVRATVLVFNDPRSRELLERIERLAPSEANALVIGETGTGKELVARHIHALSGRNGGPFVAVNCGA
FAESLVESELFGHEKGAFTGALQSKAGWFEAANGGTLFLDEIGDLPPSIQVKLLRVLQEREVVRLGSRRPIPIDVRLVAA
TNVDLADAVVAGHFREDLFYRLHVATIQLPPLRERRGDILPLAEYFIVEHCRRLGYTSASLSPEAERKLLGHSWAGNIRE
LENAIHHALLVCRNRLIQPADLHLIDMRARQEPSGLRRAPESAAGSALEAALQALFEENREDLYEHIEETVFRAAYRFCH
GNQLQTGRLLGISRNIVRARLEKIGELETSPRHNVVSLVGK*

  Nucleotide sequence: 1086 bp    

>T6CP012534 NC_017548:2986512-2987597 [Pseudomonas aeruginosa M18] [Sfa3]
ATGTCCGTCATCACCCATCCCCACGCCCGCGAGCTGACCAAATCGGTGCGCGCCACCGTGCTGGTGTTCAACGACCCCCG
TTCCCGCGAGCTGCTGGAGCGCATCGAGCGCCTGGCGCCCAGCGAGGCCAACGCGCTGGTCATCGGCGAGACCGGCACCG
GCAAGGAGCTGGTGGCGCGCCATATCCACGCCCTCAGCGGACGCAACGGCGGCCCGTTCGTCGCGGTCAACTGCGGTGCT
TTCGCCGAGAGCCTGGTGGAGAGCGAGCTGTTCGGTCACGAGAAGGGCGCCTTTACCGGTGCGTTGCAGAGCAAGGCCGG
CTGGTTCGAGGCAGCCAACGGCGGCACCCTGTTCCTCGACGAGATCGGCGACCTGCCGCCGAGCATCCAGGTCAAGCTGC
TGCGCGTGCTGCAGGAACGCGAGGTGGTGCGGCTCGGTTCGCGCCGGCCGATCCCCATCGACGTGCGGCTGGTGGCGGCG
ACCAACGTCGACCTGGCTGACGCGGTGGTCGCCGGACACTTCCGCGAGGACCTGTTCTACCGCCTGCACGTGGCGACCAT
CCAACTGCCGCCGTTGCGCGAGCGCCGCGGCGATATCCTGCCGCTGGCCGAGTACTTCATCGTCGAGCACTGCCGGCGCC
TCGGCTACACCAGCGCGAGCCTGAGCCCGGAAGCCGAGCGCAAGCTGCTCGGGCATTCCTGGGCGGGCAATATCCGCGAG
CTGGAGAACGCCATCCACCACGCGCTGCTGGTCTGCCGCAACCGTCTGATCCAGCCGGCCGACCTGCACCTCATCGACAT
GCGTGCGCGCCAGGAGCCGAGCGGCTTGCGCCGCGCCCCCGAGAGCGCCGCCGGCTCGGCGCTGGAAGCGGCGCTGCAGG
CACTGTTCGAGGAAAACCGCGAGGATCTCTACGAGCACATCGAGGAAACCGTGTTCCGTGCCGCCTATCGCTTCTGCCAC
GGCAACCAGTTGCAGACCGGACGCCTGCTGGGGATCAGCCGCAACATCGTGCGCGCCCGCCTGGAGAAGATCGGCGAGCT
GGAAACCTCGCCACGGCACAACGTGGTCTCGCTGGTGGGCAAGTGA