Detailed information of component protein


Summary

Component ID T6CP012532
Component protein type PppA
T6SS ID (Type) T6SS00611 insolico (Type i3)
Strain Pseudomonas aeruginosa M18
Replicon chromosome
Sequence Protein sequence (243 a.a.); Nucleotide sequence (729 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene) PAM18_RS00385
Coordinate (Strand) 88531..89259 (-)
NCBI ID WP_003106965.1
RefSeq NC_017548
Uniprot ID -
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
PP2C_2 PF13672.8 1.7e-11 21..207

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -



  Protein sequence: 243 a.a.    

>T6CP012532 NC_017548:c89259-88531 [Pseudomonas aeruginosa M18] [PppA]
MVPNSVSYYRSASYSHVGMVRKVNEDASLDAPEAGLWVVADGMGGHAAGDFVSSLIVDTLRRIPAASSLPAYVGALRTGL
AQVNERVRQEAGLRGVSVMGSTLVLLAARGNQASCLWAGDSRLYRLRGGVLEAISRDHSYVQELLDNALISEEEARHHPR
ANVVTRAVGVHEQLELSEAALHVLPGDSFLLCSDGLNKTADDSELRDVLSHSDPYAVVRSLVHLGLTRGAPDNITALVVR
AF*

  Nucleotide sequence: 729 bp    

>T6CP012532 NC_017548:c89259-88531 [Pseudomonas aeruginosa M18] [PppA]
ATGGTGCCCAACTCAGTCAGCTACTACAGGTCGGCCAGCTACAGCCACGTCGGCATGGTCCGCAAGGTCAACGAAGACGC
CAGTCTCGACGCCCCCGAGGCGGGACTCTGGGTGGTCGCCGACGGCATGGGCGGCCACGCCGCCGGCGACTTCGTCAGCA
GCCTGATCGTCGATACCCTGCGGCGCATCCCGGCGGCCTCCTCGCTACCGGCCTATGTCGGCGCGTTGCGCACCGGCCTC
GCCCAGGTCAACGAGCGGGTTCGCCAGGAGGCCGGCCTGCGTGGCGTCAGCGTGATGGGCAGCACCCTGGTACTGCTCGC
CGCGCGCGGCAACCAGGCGAGCTGCCTGTGGGCCGGCGACAGCCGCCTGTACCGCCTGCGCGGCGGCGTGCTGGAAGCCA
TCTCGCGGGACCACAGCTACGTCCAGGAGCTGCTCGACAACGCACTGATCAGCGAGGAAGAGGCGCGCCACCATCCGCGC
GCCAACGTGGTCACCCGCGCGGTCGGCGTGCACGAGCAACTGGAACTGTCGGAAGCCGCGCTGCACGTGCTGCCCGGCGA
CAGCTTCCTGCTCTGCAGCGACGGCCTCAACAAGACCGCCGACGACAGCGAACTGCGCGACGTGCTCAGCCACAGCGATC
CCTATGCGGTGGTCCGCAGCCTGGTCCACCTGGGCCTGACCCGCGGCGCCCCGGACAACATCACGGCCCTGGTGGTCAGG
GCCTTCTGA