Detailed information of component protein


Summary

Component ID T6CP012483
Component protein type VasH
T6SS ID (Type) T6SS00216 insolico (Type i1)
Strain Marinomonas sp. MWYL1
Replicon chromosome
Sequence Protein sequence (517 a.a.); Nucleotide sequence (1551 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene) MMWYL1_RS06115
Coordinate (Strand) 1348733..1350283 (+)
NCBI ID WP_012068921.1
RefSeq NC_009654
Uniprot ID -
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Sigma54_activat PF00158.28 1e-66 194..360

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -



  Protein sequence: 517 a.a.    

>T6CP012483 NC_009654:1348733-1350283 [Marinomonas sp. MWYL1] [VasH]
MNNWLKSAAELVVIRSTAQLLSTFTQVLDSELGCRGVYVLTPSADGRFVESSMNDSRQLSWSVSDFDNPFAHVIHSGKVM
ILRNSELLYWLTNDSFADLIGCTDETVNVIILPMLSKDGQLQAILVLKTDSYSNYDVDSDENFLGLLSVCANHLQLLNDM
EAKKRKSQLLSESLIEVEQGKKKNHLLDGLANVLIGQSDVMKSLREQVTIAASSRLSVMIQGETGTGKELVSRAVHDLSS
RSKANFVAINCAAIPEHLLESELFGYVKGAFSGADKSKKGLLADADGGTLFLDEIGDMPLALQAKLLRVLESHKYRPVGS
EKELDSNFRLVVATHLNLKQQVLDNKFRKDLYYRLYQYPITLPRLKDRKSDIEKLSAHFVEQYNAKHKSSVRGLHYKAMD
CLLDYDFPGNVRELKHLIEYGAAQTQNGEQIELAYIQLKLDSEMASSSQPEPKNRALVELSTIRDLKVAVREYESNIIAA
RLREFDGDRGRTAESLGIPKRTLADKCLKLEISIND*

  Nucleotide sequence: 1551 bp    

>T6CP012483 NC_009654:1348733-1350283 [Marinomonas sp. MWYL1] [VasH]
ATGAATAACTGGCTTAAGTCTGCAGCTGAGTTGGTGGTGATTCGTAGCACCGCTCAGTTGTTGTCAACATTCACGCAAGT
ACTTGATAGCGAGCTAGGGTGCCGAGGGGTTTATGTCCTAACCCCTTCTGCTGATGGGCGCTTTGTAGAATCGAGCATGA
ATGATAGTCGTCAATTATCTTGGTCGGTTTCTGACTTTGATAATCCATTTGCCCACGTCATTCATTCAGGCAAAGTCATG
ATACTGCGTAACAGCGAATTGCTTTACTGGTTAACGAATGACAGTTTTGCTGATCTGATTGGTTGTACTGATGAAACCGT
AAACGTCATCATTTTGCCCATGTTGTCAAAAGATGGGCAGCTTCAGGCGATCTTGGTTTTAAAAACGGATAGTTACTCGA
ATTATGATGTGGACAGCGATGAAAATTTTTTAGGTCTGCTGTCTGTTTGTGCGAATCATTTACAGTTACTTAATGATATG
GAAGCAAAGAAAAGGAAGTCACAACTGCTGTCAGAGTCATTGATAGAAGTGGAACAAGGTAAGAAAAAGAACCATCTCTT
GGATGGACTTGCCAACGTATTAATTGGTCAAAGTGACGTAATGAAATCGCTGCGTGAACAGGTGACCATTGCTGCATCAT
CCCGTCTTTCAGTGATGATTCAAGGAGAGACAGGTACGGGGAAGGAGTTAGTGTCGCGTGCTGTCCATGATTTGTCCTCA
CGTAGTAAAGCAAATTTTGTCGCTATAAATTGTGCTGCTATCCCTGAGCATTTGCTGGAAAGCGAGTTGTTTGGCTACGT
CAAAGGCGCATTTTCCGGTGCAGATAAAAGTAAAAAAGGGCTGTTAGCCGATGCGGACGGGGGCACTCTATTCCTGGATG
AAATCGGAGATATGCCGTTAGCTTTGCAAGCGAAATTGCTTAGAGTATTGGAATCTCATAAATATCGCCCAGTAGGATCT
GAAAAAGAATTGGATTCTAACTTTAGATTAGTGGTGGCTACTCATTTAAATCTAAAACAACAGGTATTGGATAATAAGTT
CCGCAAGGATTTGTATTATCGCTTATATCAATACCCCATCACTTTGCCGCGTTTAAAAGATCGCAAGTCAGATATTGAAA
AACTCAGTGCGCATTTTGTTGAACAATATAATGCCAAGCACAAATCCAGCGTGCGTGGTCTGCATTATAAAGCGATGGAT
TGCTTACTCGATTATGACTTCCCTGGAAATGTTCGAGAATTAAAACATCTTATTGAATATGGTGCTGCTCAGACGCAAAA
CGGTGAGCAAATTGAACTGGCCTACATTCAATTGAAACTTGACAGTGAAATGGCTAGCTCAAGTCAACCTGAGCCAAAAA
ATAGAGCTTTGGTTGAGCTTTCCACCATTCGAGATCTTAAAGTGGCGGTAAGGGAATATGAGTCCAATATCATTGCTGCT
CGATTGCGTGAATTTGATGGAGATAGAGGACGAACTGCTGAGAGTTTGGGCATACCCAAACGAACCTTGGCAGATAAGTG
TTTGAAATTGGAGATTTCCATAAATGATTAG