Detailed information of component protein


Summary

Component ID T6CP012460
Component protein type Sfa3
T6SS ID (Type) T6SS00151 experimental (Type i4a)
Strain Pseudomonas aeruginosa UCBPP-PA14
Replicon chromosome
Sequence Protein sequence (362 a.a.); Nucleotide sequence (1086 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) PA14_RS13925
Coordinate (Strand) 3037579..3038664 (+)
NCBI ID WP_003139325.1
RefSeq NC_008463
Uniprot ID A0A0H2ZA37_PSEAB
KEGG ID pau:PA14_34150
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Sigma54_activat PF00158.28 3.9e-68 22..188
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-361 MSVITHPHARELTKSVRATVLVFNDPRSRELLERIERLAPSEANALVIGETGTGKELVARHIHALSGRSGGPFVAVNCGAFAESLVESELFGHEKGAFTGALQSKAGWFEAANGGTLFLDEIGDLPPSIQVKLLRVLQEREVVRLGSRRPIPIDVRLVAATNVDLAEAVVAGHFREDLFYRLHVATIQLPPLRERRGDILPLAEYFIVEHCRRLGYTSASLSPEAERKLLGHSWAGNIRELENAIHHALLVCRNRLIQPADLHLIDMRARQEPSGLRRAPESAAGSALEAALQALFEENREDLYEHIEETVFRAAYRFCHGNQLQTGRLLGISRNIVRARLEKIGELETSPRHNVVSLVGK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9905 - -


  Protein sequence: 362 a.a.    

>T6CP012460 NC_008463:3037579-3038664 [Pseudomonas aeruginosa UCBPP-PA14] [Sfa3]
MSVITHPHARELTKSVRATVLVFNDPRSRELLERIERLAPSEANALVIGETGTGKELVARHIHALSGRSGGPFVAVNCGA
FAESLVESELFGHEKGAFTGALQSKAGWFEAANGGTLFLDEIGDLPPSIQVKLLRVLQEREVVRLGSRRPIPIDVRLVAA
TNVDLAEAVVAGHFREDLFYRLHVATIQLPPLRERRGDILPLAEYFIVEHCRRLGYTSASLSPEAERKLLGHSWAGNIRE
LENAIHHALLVCRNRLIQPADLHLIDMRARQEPSGLRRAPESAAGSALEAALQALFEENREDLYEHIEETVFRAAYRFCH
GNQLQTGRLLGISRNIVRARLEKIGELETSPRHNVVSLVGK*

  Nucleotide sequence: 1086 bp    

>T6CP012460 NC_008463:3037579-3038664 [Pseudomonas aeruginosa UCBPP-PA14] [Sfa3]
ATGTCCGTCATCACCCATCCCCACGCCCGCGAGCTGACCAAATCGGTGCGCGCCACCGTGCTGGTGTTCAACGACCCCCG
TTCCCGCGAGCTGCTGGAGCGCATCGAGCGCCTGGCGCCCAGCGAGGCCAACGCGCTGGTCATCGGCGAGACCGGCACCG
GCAAGGAGCTGGTGGCGCGCCATATCCATGCCCTCAGCGGACGCAGCGGCGGCCCGTTCGTCGCGGTCAACTGCGGTGCT
TTCGCCGAGAGCCTGGTGGAGAGCGAGCTGTTCGGCCACGAGAAGGGCGCCTTTACCGGTGCGTTGCAGAGCAAGGCCGG
CTGGTTCGAGGCGGCCAACGGCGGCACCCTGTTCCTCGACGAGATCGGCGACCTGCCGCCGAGCATCCAGGTCAAGCTGC
TGCGCGTGCTGCAGGAGCGCGAGGTGGTGCGGCTCGGTTCGCGCCGGCCGATCCCCATCGACGTGCGGCTGGTGGCGGCG
ACCAACGTCGACCTGGCCGAGGCGGTGGTCGCTGGGCACTTCCGCGAGGACCTGTTCTACCGCCTGCACGTGGCGACCAT
CCAACTGCCGCCGTTGCGCGAGCGCCGCGGCGATATCCTGCCGCTGGCCGAGTACTTCATCGTCGAGCACTGCCGGCGCC
TCGGCTACACCAGCGCGAGCCTGAGCCCGGAAGCCGAGCGCAAGCTGCTCGGGCACTCCTGGGCGGGCAATATCCGCGAG
CTGGAGAACGCCATCCACCACGCGCTGCTGGTCTGCCGCAACCGCCTGATCCAGCCGGCCGACCTGCACCTCATCGACAT
GCGTGCGCGCCAGGAGCCGAGCGGCTTGCGCCGTGCTCCCGAGAGCGCCGCCGGCTCGGCGCTGGAAGCGGCGCTGCAGG
CGCTGTTCGAGGAAAACCGCGAGGATCTCTACGAGCACATCGAGGAAACCGTGTTCCGCGCCGCCTATCGCTTCTGCCAC
GGCAACCAGTTGCAGACCGGACGCCTGCTGGGGATCAGCCGCAACATCGTGCGCGCCCGCCTGGAGAAGATCGGCGAGCT
GGAAACCTCGCCACGACACAACGTGGTCTCGCTGGTGGGCAAGTGA