Detailed information of component protein
Summary
External database links
Locus tag (Gene) | PA1670 |
Coordinate (Strand) | 1822601..1823329 (+) |
NCBI ID | NP_250361.1 |
RefSeq | NC_002516 |
Uniprot ID | Q9I355_PSEAE |
KEGG ID | pae:PA1670 |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
PP2C_2 | PF13672.8 | 4.5e-15 | 18..202 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-242 | MQRTEPWRSAARTDRGKVRARNEDAFLDCPDRGLWAVADGMGGHQAGDLASRMIVTSLAELPARAGFDERLNAMRQCLHWLNRRLGEELTLSAERGDRIIGSTVVALVVEGSRAACVWVGDSRCYLWRGQRLYQLSRDHSLLQRLVDERRMDIEQARAYPSARALTRAVGASEQLVLDVLELEVHPGDVFLLCSDGLYEELSADALGRALSLASPQVAVERLFDGALSGAARDNLTAVVIRQ |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9732 | - | - |
Protein sequence: 243 a.a.
>T6CP012422 NC_002516:1822601-1823329 [Pseudomonas aeruginosa PAO1] [Stp1]
MQRTEPWRSAARTDRGKVRARNEDAFLDCPDRGLWAVADGMGGHQAGDLASRMIVTSLAELPARAGFDERLNAMRQCLHW
LNRRLGEELTLSAERGDRIIGSTVVALVVEGSRAACVWVGDSRCYLWRGQRLYQLSRDHSLLQRLVDERRMDIEQARAYP
SARALTRAVGASEQLVLDVLELEVHPGDVFLLCSDGLYEELSADALGRALSLASPQVAVERLFDGALSGAARDNLTAVVI
RQ*
MQRTEPWRSAARTDRGKVRARNEDAFLDCPDRGLWAVADGMGGHQAGDLASRMIVTSLAELPARAGFDERLNAMRQCLHW
LNRRLGEELTLSAERGDRIIGSTVVALVVEGSRAACVWVGDSRCYLWRGQRLYQLSRDHSLLQRLVDERRMDIEQARAYP
SARALTRAVGASEQLVLDVLELEVHPGDVFLLCSDGLYEELSADALGRALSLASPQVAVERLFDGALSGAARDNLTAVVI
RQ*
Nucleotide sequence: 729 bp
>T6CP012422 NC_002516:1822601-1823329 [Pseudomonas aeruginosa PAO1] [Stp1]
ATGCAACGCACCGAGCCCTGGCGCAGCGCGGCACGCACGGATCGCGGCAAGGTCCGCGCGCGCAACGAGGATGCCTTCCT
GGACTGCCCGGATCGCGGGCTCTGGGCGGTCGCCGATGGCATGGGCGGGCACCAGGCCGGCGACCTGGCCAGCCGGATGA
TCGTCACCAGCCTGGCGGAACTGCCGGCCCGGGCGGGATTCGACGAGCGCCTGAACGCGATGCGCCAGTGCCTGCACTGG
CTCAACCGGCGCCTGGGCGAGGAACTCACCCTCAGCGCCGAACGCGGCGACAGGATCATCGGCAGTACGGTGGTGGCGCT
GGTCGTGGAGGGTTCGCGGGCGGCCTGCGTGTGGGTCGGCGACAGCCGCTGCTACCTGTGGCGCGGCCAGCGGCTGTACC
AGCTGTCCCGCGACCACTCGCTGTTGCAGCGACTGGTCGACGAACGGCGGATGGATATCGAGCAGGCCCGCGCCTATCCC
TCGGCGCGCGCGCTGACACGTGCCGTCGGCGCCAGCGAACAACTGGTGCTGGACGTGTTGGAACTGGAGGTGCATCCCGG
GGATGTCTTCCTGCTCTGCAGCGACGGGCTCTACGAAGAGCTGAGCGCCGATGCGCTGGGTCGCGCGTTGAGCCTGGCAT
CGCCGCAGGTGGCGGTGGAGCGGCTGTTCGACGGTGCCCTGAGCGGCGCCGCACGGGACAACCTGACGGCCGTGGTGATC
CGCCAATGA
ATGCAACGCACCGAGCCCTGGCGCAGCGCGGCACGCACGGATCGCGGCAAGGTCCGCGCGCGCAACGAGGATGCCTTCCT
GGACTGCCCGGATCGCGGGCTCTGGGCGGTCGCCGATGGCATGGGCGGGCACCAGGCCGGCGACCTGGCCAGCCGGATGA
TCGTCACCAGCCTGGCGGAACTGCCGGCCCGGGCGGGATTCGACGAGCGCCTGAACGCGATGCGCCAGTGCCTGCACTGG
CTCAACCGGCGCCTGGGCGAGGAACTCACCCTCAGCGCCGAACGCGGCGACAGGATCATCGGCAGTACGGTGGTGGCGCT
GGTCGTGGAGGGTTCGCGGGCGGCCTGCGTGTGGGTCGGCGACAGCCGCTGCTACCTGTGGCGCGGCCAGCGGCTGTACC
AGCTGTCCCGCGACCACTCGCTGTTGCAGCGACTGGTCGACGAACGGCGGATGGATATCGAGCAGGCCCGCGCCTATCCC
TCGGCGCGCGCGCTGACACGTGCCGTCGGCGCCAGCGAACAACTGGTGCTGGACGTGTTGGAACTGGAGGTGCATCCCGG
GGATGTCTTCCTGCTCTGCAGCGACGGGCTCTACGAAGAGCTGAGCGCCGATGCGCTGGGTCGCGCGTTGAGCCTGGCAT
CGCCGCAGGTGGCGGTGGAGCGGCTGTTCGACGGTGCCCTGAGCGGCGCCGCACGGGACAACCTGACGGCCGTGGTGATC
CGCCAATGA