Detailed information of component protein


Summary

Component ID T6CP012412
Component protein type PAAR
T6SS ID (Type) T6SS00926 experimental (Type iii)
Strain Bacteroides fragilis 638R
Replicon chromosome
Sequence Protein sequence (229 a.a.); Nucleotide sequence (687 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) BF638R_RS09300
Coordinate (Strand) 2339030..2339716 (-)
NCBI ID WP_008768470.1
RefSeq NC_016776
Uniprot ID Q64UY8_BACFR, D1JLP6_BACFG, E1WVT7_BACF6
KEGG ID bfg:BF638R_1980, bfr:BF1943
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
PAAR_motif PF05488.15 3.2e-14 18..85

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-228 MKQIVTVTLNHICPMVTGITPHVGGPIIGPGCPGVLVNGTPVSLMGDACVCCGPPDMIAQGYPGIMVDGIPVVVQNCMTAHGGTIPMGVPGVTVGNATPIEPMTMHIKRIPFPRIRVIDKIGAAISGNSKRLKQAADNQNDLRKKAFREELAIYNVHWEREEVFTDEGFMRHKITVVADTSGYEEGETITFTITPDDIDPDFGLQPDEKQVEGTVENGRVRAEWLVEI



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
SP(Sec/SPI) 0.5299 pos: 18-19. VTG-IT. MKQIVTVTLNHICPMVTG



  Protein sequence: 229 a.a.    

>T6CP012412 NC_016776:c2339716-2339030 [Bacteroides fragilis 638R] [PAAR]
MKQIVTVTLNHICPMVTGITPHVGGPIIGPGCPGVLVNGTPVSLMGDACVCCGPPDMIAQGYPGIMVDGIPVVVQNCMTA
HGGTIPMGVPGVTVGNATPIEPMTMHIKRIPFPRIRVIDKIGAAISGNSKRLKQAADNQNDLRKKAFREELAIYNVHWER
EEVFTDEGFMRHKITVVADTSGYEEGETITFTITPDDIDPDFGLQPDEKQVEGTVENGRVRAEWLVEI*

  Nucleotide sequence: 687 bp    

>T6CP012412 NC_016776:c2339716-2339030 [Bacteroides fragilis 638R] [PAAR]
ATGAAACAGATTGTGACAGTAACTTTAAATCATATATGTCCAATGGTCACAGGGATAACACCCCATGTGGGAGGTCCAAT
CATAGGTCCCGGTTGTCCGGGAGTATTGGTAAATGGAACACCGGTATCCCTTATGGGAGATGCCTGCGTATGTTGTGGCC
CTCCTGACATGATAGCGCAAGGATATCCGGGAATAATGGTTGATGGTATCCCTGTGGTCGTACAAAACTGTATGACAGCC
CACGGAGGCACTATCCCCATGGGCGTGCCTGGAGTAACGGTAGGCAATGCTACACCGATAGAGCCCATGACAATGCACAT
TAAGAGAATACCCTTTCCTCGGATTCGCGTAATCGATAAAATAGGAGCGGCTATCTCGGGAAACTCGAAGAGACTAAAAC
AGGCTGCTGACAATCAAAATGACTTGCGCAAAAAAGCATTTCGGGAGGAACTGGCTATATACAATGTGCATTGGGAAAGA
GAAGAGGTATTTACCGACGAAGGATTTATGCGGCATAAAATAACCGTTGTGGCCGACACGTCTGGATATGAAGAGGGTGA
AACCATTACTTTTACCATTACCCCCGACGATATAGACCCTGACTTCGGGCTACAACCCGATGAAAAGCAAGTGGAAGGAA
CGGTGGAAAATGGTCGTGTCCGTGCGGAATGGTTAGTTGAAATTTGA