Detailed information of component protein


Summary

Component ID T6CP012398
Component protein type PAAR
T6SS ID (Type) T6SS00904 experimental (Type i2)
Strain Escherichia coli strain TW-XM
Replicon chromosome
Sequence Protein sequence (528 a.a.); Nucleotide sequence (1584 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 21344..22927 (+)
NCBI ID 611963694
GenBank KF678349
Uniprot ID X5FDT1_ECOLX
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
PAAR_motif PF05488.15 2.6e-08 12..69
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-527 MAMGTGYFLVRGDKTTCGGKIIEGADDHTIMGIPQARDMDRVTCGRYPGMFIIVGGVPETDIHGRLMAGSLDSQSSCPCKARFIASMMDDTYETDDGGSEPEQHAQSARKNLTSGNPDKKYSHQIKLQHGENNVSVQDIPYVFILNNNMSLSGKTNQDGETERIYTDTAQKVIALTGKLADSWLKRGKNFGSLKEIDNRKIELTTEENEPVKYVNWINGRDYIVIVAARTAVTNWIGMEDSKGNQYRFINCGLEQLQQFPPASKQDSSSQRIMVVFSLGYTQKDIDRINDYTKAHDGRIIYVKNKDELVSFLNQRKEKGRVIKELVILCHGVIKTASYHYHHEDKDIEKNGMFKHEDIAAVHESVFDYDAHVTTYACRAGISDGDKDFSGKDDAGQKDSPAQKMADNWDVMVKAFEMRSDYSLAYGTGKEIKEAQEYGSVVEKYKKDIDMYNKEKAKGNTEVSPPVKPEGYDEKSKRHADVTTRDKNEKSGGGPIAPNGAWHMPRTGDSPKGLKSGLQDYQPEEWVQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9793 - -


  Protein sequence: 528 a.a.    

>T6CP012398 KF678349:21344-22927 [Escherichia coli] [PAAR]
MAMGTGYFLVRGDKTTCGGKIIEGADDHTIMGIPQARDMDRVTCGRYPGMFIIVGGVPETDIHGRLMAGSLDSQSSCPCK
ARFIASMMDDTYETDDGGSEPEQHAQSARKNLTSGNPDKKYSHQIKLQHGENNVSVQDIPYVFILNNNMSLSGKTNQDGE
TERIYTDTAQKVIALTGKLADSWLKRGKNFGSLKEIDNRKIELTTEENEPVKYVNWINGRDYIVIVAARTAVTNWIGMED
SKGNQYRFINCGLEQLQQFPPASKQDSSSQRIMVVFSLGYTQKDIDRINDYTKAHDGRIIYVKNKDELVSFLNQRKEKGR
VIKELVILCHGVIKTASYHYHHEDKDIEKNGMFKHEDIAAVHESVFDYDAHVTTYACRAGISDGDKDFSGKDDAGQKDSP
AQKMADNWDVMVKAFEMRSDYSLAYGTGKEIKEAQEYGSVVEKYKKDIDMYNKEKAKGNTEVSPPVKPEGYDEKSKRHAD
VTTRDKNEKSGGGPIAPNGAWHMPRTGDSPKGLKSGLQDYQPEEWVQ*

  Nucleotide sequence: 1584 bp    

>T6CP012398 KF678349:21344-22927 [Escherichia coli] [PAAR]
ATGGCAATGGGAACAGGCTACTTTCTGGTCAGGGGGGACAAAACCACCTGCGGCGGGAAGATTATTGAAGGCGCGGACGA
CCATACGATCATGGGTATCCCACAGGCACGGGATATGGATCGGGTCACCTGCGGCAGATATCCGGGAATGTTTATTATTG
TGGGCGGCGTGCCGGAAACGGATATTCACGGCAGGCTGATGGCGGGATCTCTGGACAGCCAGAGCAGTTGCCCGTGCAAG
GCGCGGTTTATTGCGTCAATGATGGATGATACCTATGAAACGGATGACGGGGGAAGCGAGCCGGAACAACATGCGCAGTC
GGCGAGGAAAAATCTGACTTCCGGTAATCCAGATAAAAAATACAGTCATCAGATAAAACTTCAACATGGCGAAAATAATG
TTAGTGTACAGGACATACCTTATGTCTTTATCCTAAATAATAACATGTCTCTCAGTGGCAAGACTAATCAGGATGGCGAG
ACTGAGAGAATATATACAGATACTGCTCAAAAGGTAATTGCACTTACAGGAAAACTGGCTGATTCCTGGCTGAAAAGAGG
GAAAAATTTTGGTTCATTAAAAGAAATTGACAATAGAAAGATCGAATTAACAACTGAAGAGAATGAACCTGTAAAATATG
TCAACTGGATTAATGGGCGTGATTATATTGTGATTGTGGCGGCCAGAACAGCCGTAACAAACTGGATAGGAATGGAGGAC
TCAAAAGGAAATCAGTATCGATTTATAAATTGTGGATTAGAACAATTACAACAGTTTCCTCCAGCCAGTAAACAGGATTC
CAGTTCGCAGCGAATTATGGTGGTTTTTTCGCTTGGGTATACGCAAAAAGATATTGATAGAATTAATGATTATACTAAAG
CGCACGATGGAAGAATTATCTATGTCAAGAATAAGGATGAATTAGTTTCATTCCTGAATCAACGCAAAGAAAAAGGAAGA
GTGATTAAGGAACTGGTTATTCTGTGCCACGGTGTTATTAAAACAGCTTCATATCATTATCATCATGAAGACAAGGATAT
TGAAAAAAATGGAATGTTTAAACATGAAGATATTGCAGCAGTTCACGAGTCAGTTTTTGATTATGATGCCCATGTGACAA
CATATGCCTGTCGGGCCGGTATCTCAGATGGTGATAAAGATTTTTCCGGGAAGGATGATGCAGGGCAAAAGGACAGCCCG
GCACAGAAAATGGCTGATAACTGGGATGTCATGGTTAAAGCGTTTGAGATGAGATCGGACTACAGTCTGGCTTATGGGAC
AGGCAAGGAAATTAAAGAAGCTCAGGAATATGGTAGTGTGGTAGAAAAATATAAAAAAGATATAGATATGTATAATAAAG
AAAAAGCAAAGGGGAATACTGAAGTTTCCCCTCCAGTGAAACCAGAGGGATATGATGAGAAATCAAAACGCCATGCAGAT
GTTACTACCAGAGACAAAAATGAAAAGTCTGGCGGAGGACCAATAGCTCCTAATGGTGCATGGCATATGCCAAGAACAGG
GGATTCGCCGAAAGGGCTGAAAAGCGGGTTACAGGATTATCAGCCTGAGGAGTGGGTTCAATAA