Detailed information of component protein


Summary

Component ID T6CP012397
Component protein type PAAR
T6SS ID (Type) T6SS00904 experimental (Type i2)
Strain Escherichia coli strain TW-XM
Replicon chromosome
Sequence Protein sequence (112 a.a.); Nucleotide sequence (336 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 14905..15240 (+)
NCBI ID 611963690
GenBank KF678349
Uniprot ID X5FWH6_ECOLX
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
PAAR_motif PF05488.15 3.9e-20 33..102
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-111 MTGNRQLYFHFLNYFPVVNKSEVKIMRGIVCLGDATTHGGKVITATSTLFINGIQVALVGDLVSCPKHGVNPIQEGDPTATEKGRNVVVNHCQCACGCRVISSQPENSIES


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9537 - -


  Protein sequence: 112 a.a.    

>T6CP012397 KF678349:14905-15240 [Escherichia coli] [PAAR]
MTGNRQLYFHFLNYFPVVNKSEVKIMRGIVCLGDATTHGGKVITATSTLFINGIQVALVGDLVSCPKHGVNPIQEGDPTA
TEKGRNVVVNHCQCACGCRVISSQPENSIES*

  Nucleotide sequence: 336 bp    

>T6CP012397 KF678349:14905-15240 [Escherichia coli] [PAAR]
ATGACCGGGAATAGGCAACTATACTTTCATTTTTTAAATTATTTTCCTGTTGTAAATAAATCAGAGGTAAAAATTATGCG
TGGGATCGTTTGTTTAGGTGATGCCACGACTCATGGTGGTAAGGTGATTACCGCAACTTCAACGCTTTTTATCAATGGCA
TTCAGGTAGCTCTCGTAGGTGATCTGGTTTCCTGCCCAAAGCACGGCGTGAATCCCATACAAGAAGGTGACCCGACAGCG
ACGGAAAAAGGTCGTAATGTCGTTGTTAATCATTGCCAATGTGCATGTGGCTGTAGGGTTATCAGTTCTCAACCAGAAAA
TAGTATCGAGTCATAA