Detailed information of component protein
Summary
External database links
Locus tag (Gene) | VEPGS_0004 |
Coordinate (Strand) | 4297..5571 (-) |
NCBI ID | 225382147 |
GenBank | FJ790776 |
Uniprot ID | C0LZM2_VIBAL |
KEGG ID | - |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-424 | MVNGNKILKNQPVAIVDGDIISLGQYEIGVSLEHVTSTLDIAADIAPERVSSDPLVSLGDAVVEEEEKVGALEDLFMETKQDDIDCHDPVAHLNFSMQRDDDYLIRDNERTESEQPRTVESTCQVVDDSFSIYSEFDQPSLIPEDWMAAETKSNASVNDALAPESGKAHRADIASAEVMQPGTVAPDSTIQRQHRTPNVTEMVVEQANTGSKWEEMTQSFTPSPNTNQQLQIPTAEHAINSTTKAQVDTDAAVCSQDIAQAFFDGLGIRNPELMTNEAQLFKQMGTCLRLCIDNLQKELHEVESLKDEQSASEANSNIAELMLTLNSQQLLAPNELVEQMLDELNDHQVMFNKALNELVLEQSETNDPVAFANRVASQSLFSTKSKLWAEYLDFYTNNRRLLNETSLKGLIKKNYNKVIKGNHA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9957 | - | - |
Protein sequence: 425 a.a.
>T6CP012277 FJ790776:c5571-4297 [Vibrio alginolyticus] [FHA]
MVNGNKILKNQPVAIVDGDIISLGQYEIGVSLEHVTSTLDIAADIAPERVSSDPLVSLGDAVVEEEEKVGALEDLFMETK
QDDIDCHDPVAHLNFSMQRDDDYLIRDNERTESEQPRTVESTCQVVDDSFSIYSEFDQPSLIPEDWMAAETKSNASVNDA
LAPESGKAHRADIASAEVMQPGTVAPDSTIQRQHRTPNVTEMVVEQANTGSKWEEMTQSFTPSPNTNQQLQIPTAEHAIN
STTKAQVDTDAAVCSQDIAQAFFDGLGIRNPELMTNEAQLFKQMGTCLRLCIDNLQKELHEVESLKDEQSASEANSNIAE
LMLTLNSQQLLAPNELVEQMLDELNDHQVMFNKALNELVLEQSETNDPVAFANRVASQSLFSTKSKLWAEYLDFYTNNRR
LLNETSLKGLIKKNYNKVIKGNHA*
MVNGNKILKNQPVAIVDGDIISLGQYEIGVSLEHVTSTLDIAADIAPERVSSDPLVSLGDAVVEEEEKVGALEDLFMETK
QDDIDCHDPVAHLNFSMQRDDDYLIRDNERTESEQPRTVESTCQVVDDSFSIYSEFDQPSLIPEDWMAAETKSNASVNDA
LAPESGKAHRADIASAEVMQPGTVAPDSTIQRQHRTPNVTEMVVEQANTGSKWEEMTQSFTPSPNTNQQLQIPTAEHAIN
STTKAQVDTDAAVCSQDIAQAFFDGLGIRNPELMTNEAQLFKQMGTCLRLCIDNLQKELHEVESLKDEQSASEANSNIAE
LMLTLNSQQLLAPNELVEQMLDELNDHQVMFNKALNELVLEQSETNDPVAFANRVASQSLFSTKSKLWAEYLDFYTNNRR
LLNETSLKGLIKKNYNKVIKGNHA*
Nucleotide sequence: 1275 bp
>T6CP012277 FJ790776:c5571-4297 [Vibrio alginolyticus] [FHA]
ATGGTAAATGGGAATAAAATACTAAAAAATCAACCCGTTGCGATAGTTGATGGCGACATCATTTCTTTAGGGCAATATGA
GATTGGTGTTTCTCTTGAGCACGTTACCTCAACACTAGACATCGCCGCTGATATTGCTCCTGAGCGAGTATCTAGCGATC
CTCTGGTTAGTCTAGGAGATGCGGTTGTCGAAGAGGAAGAAAAAGTCGGTGCCTTAGAAGATTTGTTTATGGAGACTAAA
CAGGATGACATTGATTGTCATGATCCTGTTGCTCACCTTAACTTTTCGATGCAGCGAGATGACGATTACTTAATTCGTGA
TAATGAGCGTACAGAATCTGAACAACCTAGAACCGTGGAAAGCACGTGTCAGGTGGTCGATGACAGTTTCAGTATATATT
CCGAATTCGATCAGCCAAGCCTAATCCCTGAAGACTGGATGGCTGCGGAAACCAAGAGTAACGCATCGGTCAATGATGCA
TTAGCGCCAGAAAGCGGTAAGGCACATAGAGCCGATATTGCCTCAGCTGAGGTGATGCAACCTGGCACGGTAGCCCCAGA
TAGCACGATTCAAAGACAACATCGTACGCCTAATGTTACTGAGATGGTCGTAGAGCAGGCTAACACAGGGTCAAAATGGG
AAGAGATGACCCAATCTTTTACGCCTTCTCCTAACACTAATCAGCAACTTCAAATACCTACGGCAGAGCACGCGATAAAC
AGTACGACGAAAGCACAAGTCGATACTGATGCGGCCGTTTGCTCTCAAGATATAGCGCAAGCGTTTTTTGATGGTTTGGG
TATTCGAAATCCAGAGTTGATGACAAACGAGGCGCAGTTATTCAAGCAAATGGGCACTTGCTTGCGTTTATGTATTGATA
ACCTACAGAAAGAGTTGCACGAAGTGGAATCGTTAAAAGATGAGCAGAGTGCGAGTGAGGCTAACTCGAACATTGCAGAG
CTAATGCTCACTTTGAATAGTCAGCAATTACTGGCTCCAAATGAACTGGTTGAACAAATGCTCGATGAGCTGAACGATCA
CCAAGTTATGTTTAACAAAGCACTGAATGAGCTCGTTTTAGAACAGTCAGAAACGAACGATCCCGTAGCATTTGCTAACA
GGGTCGCTAGCCAGTCTTTGTTCTCAACTAAGTCAAAGCTGTGGGCCGAATACCTAGATTTCTACACTAATAATCGTCGC
CTGCTTAATGAAACATCCTTAAAAGGGCTGATTAAGAAAAACTATAACAAAGTGATTAAGGGAAACCATGCGTAG
ATGGTAAATGGGAATAAAATACTAAAAAATCAACCCGTTGCGATAGTTGATGGCGACATCATTTCTTTAGGGCAATATGA
GATTGGTGTTTCTCTTGAGCACGTTACCTCAACACTAGACATCGCCGCTGATATTGCTCCTGAGCGAGTATCTAGCGATC
CTCTGGTTAGTCTAGGAGATGCGGTTGTCGAAGAGGAAGAAAAAGTCGGTGCCTTAGAAGATTTGTTTATGGAGACTAAA
CAGGATGACATTGATTGTCATGATCCTGTTGCTCACCTTAACTTTTCGATGCAGCGAGATGACGATTACTTAATTCGTGA
TAATGAGCGTACAGAATCTGAACAACCTAGAACCGTGGAAAGCACGTGTCAGGTGGTCGATGACAGTTTCAGTATATATT
CCGAATTCGATCAGCCAAGCCTAATCCCTGAAGACTGGATGGCTGCGGAAACCAAGAGTAACGCATCGGTCAATGATGCA
TTAGCGCCAGAAAGCGGTAAGGCACATAGAGCCGATATTGCCTCAGCTGAGGTGATGCAACCTGGCACGGTAGCCCCAGA
TAGCACGATTCAAAGACAACATCGTACGCCTAATGTTACTGAGATGGTCGTAGAGCAGGCTAACACAGGGTCAAAATGGG
AAGAGATGACCCAATCTTTTACGCCTTCTCCTAACACTAATCAGCAACTTCAAATACCTACGGCAGAGCACGCGATAAAC
AGTACGACGAAAGCACAAGTCGATACTGATGCGGCCGTTTGCTCTCAAGATATAGCGCAAGCGTTTTTTGATGGTTTGGG
TATTCGAAATCCAGAGTTGATGACAAACGAGGCGCAGTTATTCAAGCAAATGGGCACTTGCTTGCGTTTATGTATTGATA
ACCTACAGAAAGAGTTGCACGAAGTGGAATCGTTAAAAGATGAGCAGAGTGCGAGTGAGGCTAACTCGAACATTGCAGAG
CTAATGCTCACTTTGAATAGTCAGCAATTACTGGCTCCAAATGAACTGGTTGAACAAATGCTCGATGAGCTGAACGATCA
CCAAGTTATGTTTAACAAAGCACTGAATGAGCTCGTTTTAGAACAGTCAGAAACGAACGATCCCGTAGCATTTGCTAACA
GGGTCGCTAGCCAGTCTTTGTTCTCAACTAAGTCAAAGCTGTGGGCCGAATACCTAGATTTCTACACTAATAATCGTCGC
CTGCTTAATGAAACATCCTTAAAAGGGCTGATTAAGAAAAACTATAACAAAGTGATTAAGGGAAACCATGCGTAG