Detailed information of component protein


Summary

Component ID T6CP012274
Component protein type FHA
T6SS ID (Type) T6SS00787 experimental (Type i1)
Strain Escherichia coli RS218
Replicon chromosome
Sequence Protein sequence (203 a.a.); Nucleotide sequence (609 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) -
Coordinate (Strand) 13483..14091 (-)
NCBI ID 356875281
GenBank JN837480
Uniprot ID G8IRM2_ECOLX
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-202 MNFLPWRSTTWPVTPLLRGMECPLTLHNSQDADEFLEEAGRALQAAIKGLLSLQQQQNSLSDKHLRPLEDNPLRLDMDYATALNVMFAEGKSPVHLAAPAAIAESLRNIRHHEEANRAAIVEALRVMLDAFSPGNLMRRFAQYRRSHELRQKMDDAWAWQMYSNYYDELASSRQQGFEMLFNEVYAQVYDRVLREKQREPEA



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9526 - -



  Protein sequence: 203 a.a.    

>T6CP012274 JN837480:c14091-13483 [Escherichia coli RS218] [FHA]
MNFLPWRSTTWPVTPLLRGMECPLTLHNSQDADEFLEEAGRALQAAIKGLLSLQQQQNSLSDKHLRPLEDNPLRLDMDYA
TALNVMFAEGKSPVHLAAPAAIAESLRNIRHHEEANRAAIVEALRVMLDAFSPGNLMRRFAQYRRSHELRQKMDDAWAWQ
MYSNYYDELASSRQQGFEMLFNEVYAQVYDRVLREKQREPEA*

  Nucleotide sequence: 609 bp    

>T6CP012274 JN837480:c14091-13483 [Escherichia coli RS218] [FHA]
ATGAATTTTCTGCCATGGCGCAGTACCACCTGGCCTGTAACCCCGCTGCTGCGCGGTATGGAGTGTCCGCTGACGCTGCA
CAATTCTCAGGATGCGGATGAGTTTCTCGAAGAGGCCGGACGGGCGTTGCAGGCCGCCATTAAGGGATTGCTGAGTCTGC
AACAACAACAGAACAGCCTGTCGGATAAACACCTGCGTCCACTAGAAGACAACCCGTTGCGCCTTGATATGGACTATGCC
ACCGCGCTGAACGTCATGTTCGCCGAGGGTAAAAGCCCGGTACATCTCGCAGCACCTGCGGCCATCGCCGAAAGCCTGCG
CAACATCCGGCATCATGAAGAGGCTAACCGGGCGGCGATTGTGGAAGCGTTGCGTGTCATGCTGGACGCCTTTTCGCCGG
GCAACCTGATGCGCCGCTTTGCGCAATACCGCCGCAGCCATGAACTGCGCCAGAAAATGGACGACGCCTGGGCATGGCAG
ATGTACAGCAACTATTACGATGAGCTGGCCTCCAGCCGACAGCAGGGATTTGAAATGCTGTTCAATGAAGTTTATGCCCA
GGTCTATGACCGGGTGCTGCGCGAAAAACAGCGGGAGCCGGAAGCATGA