Detailed information of component protein


Summary

Component ID T6CP012266
Component protein type PAAR
T6SS ID (Type) T6SS00764 experimental (Type i3)
Strain Pseudomonas protegens CHA0
Replicon chromosome
Sequence Protein sequence (1487 a.a.); Nucleotide sequence (4461 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) PFLCHA0_RS30195
Coordinate (Strand) 6719085..6723545 (+)
NCBI ID WP_015637486.1
RefSeq NC_021237
Uniprot ID A0A2C9EVT1_PSEPH
KEGG ID pprc:PFLCHA0_c60550
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DUF6531 PF20148.1 6.2e-23 304..383
RHS PF03527.16 3.6e-14 1244..1280
RHS_repeat PF05593.16 2.4e-08 673..709
PAAR_motif PF05488.15 1.3e-07 182..226
RHS_repeat PF05593.16 2e-07 799..835
RHS_repeat PF05593.16 1.5e-06 715..751
RHS_repeat PF05593.16 1.9e-06 614..644
RHS_repeat PF05593.16 2.6e-06 499..535
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-22 MSDALWAARLGDGLEHTSMMAD
Transmembrane helix 23-45 ILGGVLEVAANVAIGALATMAVA
Inside 46-51 AAAGIT
Transmembrane helix 52-74 VATGGLGACVLGLVVGVVVGVVM
Outside 75-1486 SKTGADKGLSNLCEGIANALFPPSIQATIASGSKKVLTNNKPAARAAGIAPPTQISGDGAEEGEATDTPSATPEEGPGFLDMAKEFFSQMWRPTVASPAPGSQTKELDLVTCTKHPPMPVQYLAEGSEKVSIDGQPAVRSGDRSTCDAKVVSAGPISPNVTIGGGSVVVREIRSGKTPGVGLAVTVLMMLKGGKGKFLSNLPCMLMAGVNSFVVSQATNALTQAVVASTHPVHAATGAKVLGADDDLDFTLPGLMPIEWQRFYNSRDERRDGLLGAGWSLPYEISVQIEPHPEGGERLLYIDEQGRRIDMGSIALGAGAFSPGEGLSVRRNENGQLLIESSDGIYRLFEPLPGDSSRLRLSQLGDRNDNRLHLEYDSSGRLWLLRDTFEQAQLELSYSTLWPGRIAQVERLYPDQQREVLVSYDYDAAGDLAQVRDSEGQVQRRFAYDAGHRMTEHQLATGLRCFYQWTQFADQQWRVTRHWTDEGDSYQYDYDLEAGITQVTDSLQRLSRRRWNSQLQIVEYTDNLNQTWAFEWNDERQLLSATDPLGGRYAYSYDETGNLIAETDPLGHSHSTLWLEHWSLPQTLTDPAGESWHLRYDPRGNCIAEVDPLGQVTQYRHDAHGQVVEIIDAAGRSRKMRWNSSGQLLEHLDCSGYPTRFEYDRRGNVKAIIDAHGEHTRFHYDCQGRLLSSQLADGRAEHFQRSSNGQLQGYTDPSGYTTLYQYNRRGQIRQRIDAHGRQVRFDYDAYGRLLALTNENGESYRFAWDAGNRLSEQQDLDGSAKRYGYDLLNNVVELQSHPAPYGTGLSAVPAQPIAPIIHRFERDAVGRLLAKITDDGRSQYTYDPLNQLTAASFTDNLGNQQALSFSYDALGQLLEEHTVAGSLIHRYDELGNLTQTQLPDKRWLNRLYYGSGHLHQINLDGQVVSDFQRDRLHREVLRTQGQISTRSEYDRCGRLRARLQHSSLLANTLPTAPERHLEYDDSDNLVGLAERHATGQHRQLFHYDATGRIIASQDGLQGQKETFAYDAAANLLDGPKAGAGLVVHNKLLTYQDKRYRYDAFGRMIEKRSGRRGVQRFAYDAEHRLIEVRNQTSSGETLVRMRYDVLGRRISKSEYDSQGNLLGETRFVWDGLRLLQEQRNQQTSLYVYEDLGHAPLARVDGLGAQQKIRYYHNDLNGLPQQLCEPDGHSVWQARYQVWGNTVEEIREPYYIEEQNLRFQGQYLDRETGLHFNTFRFYDPDIGRFTTPDPIGLAGGLNLYQYAPNPIGWIDPLGWICKSAYSGRRGTTKAKADLERNGFTVVGEELTMKVKHPVTQKSYRIRADIIAKDKAGNYHVFEVKNGSGKLTKNQQGSGMFDMSNPANTNGGLGGGLIKPSGATQGQFEVATKTARGTQFGGNGAQHSATFWLLRY


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9647 - -


  Protein sequence: 1487 a.a.    

>T6CP012266 NC_021237:6719085-6723545 [Pseudomonas protegens CHA0] [PAAR]
MSDALWAARLGDGLEHTSMMADILGGVLEVAANVAIGALATMAVAAAAGITVATGGLGACVLGLVVGVVVGVVMSKTGAD
KGLSNLCEGIANALFPPSIQATIASGSKKVLTNNKPAARAAGIAPPTQISGDGAEEGEATDTPSATPEEGPGFLDMAKEF
FSQMWRPTVASPAPGSQTKELDLVTCTKHPPMPVQYLAEGSEKVSIDGQPAVRSGDRSTCDAKVVSAGPISPNVTIGGGS
VVVREIRSGKTPGVGLAVTVLMMLKGGKGKFLSNLPCMLMAGVNSFVVSQATNALTQAVVASTHPVHAATGAKVLGADDD
LDFTLPGLMPIEWQRFYNSRDERRDGLLGAGWSLPYEISVQIEPHPEGGERLLYIDEQGRRIDMGSIALGAGAFSPGEGL
SVRRNENGQLLIESSDGIYRLFEPLPGDSSRLRLSQLGDRNDNRLHLEYDSSGRLWLLRDTFEQAQLELSYSTLWPGRIA
QVERLYPDQQREVLVSYDYDAAGDLAQVRDSEGQVQRRFAYDAGHRMTEHQLATGLRCFYQWTQFADQQWRVTRHWTDEG
DSYQYDYDLEAGITQVTDSLQRLSRRRWNSQLQIVEYTDNLNQTWAFEWNDERQLLSATDPLGGRYAYSYDETGNLIAET
DPLGHSHSTLWLEHWSLPQTLTDPAGESWHLRYDPRGNCIAEVDPLGQVTQYRHDAHGQVVEIIDAAGRSRKMRWNSSGQ
LLEHLDCSGYPTRFEYDRRGNVKAIIDAHGEHTRFHYDCQGRLLSSQLADGRAEHFQRSSNGQLQGYTDPSGYTTLYQYN
RRGQIRQRIDAHGRQVRFDYDAYGRLLALTNENGESYRFAWDAGNRLSEQQDLDGSAKRYGYDLLNNVVELQSHPAPYGT
GLSAVPAQPIAPIIHRFERDAVGRLLAKITDDGRSQYTYDPLNQLTAASFTDNLGNQQALSFSYDALGQLLEEHTVAGSL
IHRYDELGNLTQTQLPDKRWLNRLYYGSGHLHQINLDGQVVSDFQRDRLHREVLRTQGQISTRSEYDRCGRLRARLQHSS
LLANTLPTAPERHLEYDDSDNLVGLAERHATGQHRQLFHYDATGRIIASQDGLQGQKETFAYDAAANLLDGPKAGAGLVV
HNKLLTYQDKRYRYDAFGRMIEKRSGRRGVQRFAYDAEHRLIEVRNQTSSGETLVRMRYDVLGRRISKSEYDSQGNLLGE
TRFVWDGLRLLQEQRNQQTSLYVYEDLGHAPLARVDGLGAQQKIRYYHNDLNGLPQQLCEPDGHSVWQARYQVWGNTVEE
IREPYYIEEQNLRFQGQYLDRETGLHFNTFRFYDPDIGRFTTPDPIGLAGGLNLYQYAPNPIGWIDPLGWICKSAYSGRR
GTTKAKADLERNGFTVVGEELTMKVKHPVTQKSYRIRADIIAKDKAGNYHVFEVKNGSGKLTKNQQGSGMFDMSNPANTN
GGLGGGLIKPSGATQGQFEVATKTARGTQFGGNGAQHSATFWLLRY*

  Nucleotide sequence: 4461 bp    

>T6CP012266 NC_021237:6719085-6723545 [Pseudomonas protegens CHA0] [PAAR]
ATGTCTGACGCACTGTGGGCCGCCCGCCTGGGCGACGGGCTGGAACACACCTCGATGATGGCCGACATTCTCGGCGGCGT
GCTGGAGGTGGCGGCCAACGTTGCCATCGGCGCCCTGGCGACCATGGCAGTAGCCGCGGCGGCAGGCATCACCGTGGCCA
CCGGCGGCCTCGGCGCCTGTGTGCTGGGGCTGGTGGTGGGCGTCGTCGTCGGCGTGGTCATGAGCAAGACCGGAGCCGAC
AAGGGCCTGAGCAATTTATGCGAGGGCATCGCCAACGCCCTGTTCCCGCCCTCGATCCAGGCCACCATCGCCAGCGGCTC
GAAAAAGGTCCTGACCAACAACAAGCCGGCGGCCCGCGCGGCCGGCATCGCACCGCCGACACAGATCAGCGGCGACGGCG
CCGAAGAAGGCGAGGCCACCGACACCCCGTCGGCAACGCCCGAGGAAGGGCCCGGTTTCCTCGACATGGCCAAGGAGTTT
TTCTCACAGATGTGGCGGCCCACCGTGGCCTCCCCGGCGCCAGGCTCCCAGACCAAGGAACTGGACCTGGTGACCTGCAC
CAAGCACCCGCCGATGCCGGTGCAGTATCTGGCTGAAGGCTCGGAAAAGGTCAGCATCGACGGCCAGCCGGCAGTACGCA
GCGGCGACCGCAGCACCTGCGATGCCAAGGTAGTGTCGGCCGGGCCTATCTCCCCGAACGTGACCATCGGCGGTGGCTCG
GTGGTGGTGCGCGAGATCCGTAGCGGCAAGACCCCGGGGGTGGGCCTGGCGGTGACCGTGCTGATGATGCTCAAGGGCGG
CAAGGGCAAGTTCCTCAGCAACCTGCCGTGCATGCTGATGGCCGGGGTCAATTCCTTTGTCGTCAGCCAGGCCACCAATG
CTTTGACCCAGGCCGTCGTCGCCTCGACCCACCCGGTGCATGCAGCCACCGGGGCCAAGGTGCTCGGAGCCGACGACGAT
CTGGATTTCACCCTGCCCGGGCTGATGCCCATCGAATGGCAACGCTTCTACAACAGCCGCGACGAACGTCGTGACGGCCT
GCTCGGGGCCGGCTGGAGCTTGCCTTACGAGATCAGCGTCCAGATCGAGCCCCACCCCGAAGGGGGCGAGCGCCTGCTCT
ACATTGATGAGCAAGGACGCCGCATCGACATGGGCTCCATTGCCCTGGGTGCAGGAGCCTTCAGCCCCGGTGAAGGCTTG
AGCGTGCGACGCAACGAGAACGGACAGTTGCTGATCGAAAGCAGCGACGGTATCTACCGTCTGTTCGAGCCGCTGCCGGG
CGACTCCTCGCGGCTGCGCCTGAGCCAGCTGGGGGACCGCAACGACAACCGTCTGCACCTGGAGTACGACTCGTCCGGAC
GCCTCTGGCTGCTGCGTGACACCTTTGAACAGGCGCAGCTCGAACTGAGCTACAGCACGCTCTGGCCCGGTCGGATTGCC
CAGGTCGAACGGCTGTACCCCGACCAGCAACGGGAAGTGCTGGTCAGCTACGACTACGATGCGGCAGGAGACCTGGCACA
GGTGCGCGATAGCGAAGGCCAGGTACAGCGTCGCTTCGCTTATGACGCCGGCCACCGGATGACCGAACATCAATTGGCCA
CCGGGCTGCGCTGCTTCTATCAATGGACACAATTTGCCGACCAGCAGTGGCGAGTGACCCGTCACTGGACCGACGAAGGC
GATAGCTATCAGTACGACTATGATCTGGAGGCGGGAATCACCCAGGTCACCGACAGCCTGCAACGCCTCAGCCGCCGCCG
CTGGAACAGCCAGTTGCAGATCGTCGAGTACACCGACAACCTCAACCAGACATGGGCCTTCGAGTGGAACGATGAGCGCC
AACTGCTCAGCGCCACCGACCCCTTGGGAGGGCGCTATGCCTATAGCTACGACGAAACCGGCAACCTGATAGCCGAGACC
GATCCTCTGGGGCACAGCCATTCGACCTTGTGGCTGGAGCACTGGTCGCTGCCACAGACCCTGACCGATCCCGCCGGAGA
AAGCTGGCACCTGCGCTACGATCCCCGGGGCAACTGTATCGCCGAAGTAGACCCGCTGGGCCAGGTGACCCAGTACCGCC
ATGACGCGCACGGCCAGGTGGTGGAGATCATCGATGCCGCGGGAAGAAGCCGGAAGATGCGCTGGAACTCGTCCGGGCAA
CTGCTTGAACACCTGGACTGCTCGGGCTATCCAACCCGCTTCGAATACGATCGACGCGGCAACGTGAAAGCCATCATCGA
TGCCCATGGCGAGCACACCCGGTTCCATTACGACTGCCAGGGACGGTTGCTGAGCAGTCAACTGGCCGATGGGCGCGCCG
AGCATTTTCAACGCAGCAGCAACGGTCAGCTACAGGGCTACACCGACCCTTCCGGCTACACCACGCTCTACCAGTACAAC
CGGCGCGGGCAGATACGCCAGCGCATCGACGCTCACGGCCGACAGGTCCGGTTCGACTATGACGCGTACGGACGGCTGCT
GGCGCTCACCAACGAGAACGGCGAAAGCTATCGCTTTGCCTGGGACGCCGGCAACCGCTTGAGCGAACAGCAGGACCTCG
ACGGCAGTGCCAAACGCTATGGCTATGACCTGCTGAACAACGTCGTCGAACTCCAGTCCCACCCCGCCCCTTATGGCACC
GGGCTGAGCGCCGTGCCCGCGCAACCTATCGCGCCGATCATCCACCGGTTCGAGCGCGATGCCGTGGGGCGGCTGCTGGC
CAAAATCACAGACGATGGCCGCAGCCAATACACCTACGACCCCTTGAACCAACTGACCGCCGCCAGCTTTACCGACAACC
TCGGCAACCAGCAGGCACTGAGTTTCAGCTACGACGCCCTGGGCCAATTACTCGAAGAACACACCGTGGCCGGCAGCCTG
ATCCATCGATACGACGAACTGGGCAATTTGACTCAGACCCAGCTACCGGACAAGCGTTGGCTCAACCGGCTCTATTACGG
CAGCGGCCATCTGCACCAGATCAATCTCGATGGCCAGGTAGTCAGCGACTTTCAACGTGACCGCCTGCACCGTGAGGTGC
TGCGCACCCAGGGTCAGATCAGCACTCGCAGCGAATACGACCGGTGTGGCCGCCTGCGCGCACGCCTGCAGCATTCCAGC
CTGCTGGCAAACACCTTGCCAACAGCCCCGGAGCGACACCTGGAGTACGACGATAGCGATAATCTGGTGGGCCTGGCCGA
GCGACATGCCACCGGGCAACATCGGCAACTGTTCCATTACGACGCGACCGGGCGAATCATTGCCAGCCAGGACGGCCTGC
AGGGCCAGAAAGAAACCTTCGCCTATGACGCCGCCGCCAATTTGCTTGATGGCCCGAAGGCGGGCGCCGGGCTGGTGGTG
CACAACAAATTGCTGACCTACCAGGACAAGCGCTACCGCTACGATGCCTTCGGGCGAATGATTGAAAAACGCAGTGGTCG
GCGAGGCGTGCAACGTTTTGCCTACGACGCCGAACACCGGTTGATCGAAGTGCGCAATCAGACCTCCAGCGGCGAAACCC
TGGTCAGGATGCGCTACGACGTCTTGGGTCGCCGCATCAGCAAGAGCGAGTACGACAGCCAGGGCAACCTTCTGGGTGAA
ACGCGATTCGTCTGGGATGGCCTGCGGCTGCTGCAGGAACAGCGTAATCAACAGACCAGCCTCTATGTCTATGAAGACCT
GGGACATGCGCCCCTGGCGCGGGTCGACGGCCTCGGCGCGCAGCAGAAGATCCGCTACTACCACAACGACCTGAATGGCC
TGCCTCAACAGCTTTGCGAGCCTGACGGCCATAGCGTCTGGCAGGCCCGCTATCAGGTCTGGGGCAACACTGTCGAAGAA
ATACGCGAGCCCTACTACATCGAGGAACAGAATCTCAGGTTCCAGGGCCAGTACCTGGACCGCGAGACTGGATTGCACTT
CAACACGTTCCGTTTCTACGACCCGGATATCGGGCGCTTCACCACGCCGGACCCCATCGGCCTGGCCGGAGGCTTGAACC
TTTATCAGTACGCTCCCAACCCAATCGGTTGGATCGATCCGCTGGGCTGGATCTGCAAATCGGCCTACAGCGGCAGAAGG
GGCACTACAAAAGCCAAAGCGGACCTCGAGAGGAACGGTTTCACTGTGGTAGGTGAAGAATTGACCATGAAGGTCAAACA
CCCTGTCACCCAGAAGTCCTATCGCATCAGGGCAGATATCATCGCCAAGGACAAAGCCGGTAACTACCACGTGTTCGAAG
TCAAAAATGGCAGCGGCAAACTGACCAAGAACCAACAGGGATCGGGAATGTTCGACATGAGCAATCCGGCCAATACGAAC
GGTGGTCTGGGCGGTGGCCTGATCAAACCGTCGGGCGCTACCCAGGGCCAGTTCGAAGTTGCGACCAAAACCGCCAGAGG
TACCCAGTTCGGTGGCAATGGCGCACAGCATTCGGCCACCTTCTGGCTTCTTCGCTATTGA