Detailed information of component protein


Summary

Component ID T6CP012265
Component protein type FHA
T6SS ID (Type) T6SS00764 experimental (Type i3)
Strain Pseudomonas protegens CHA0
Replicon chromosome
Sequence Protein sequence (495 a.a.); Nucleotide sequence (1485 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) PFLCHA0_RS30140
Coordinate (Strand) 6704737..6706221 (-)
NCBI ID WP_011064253.1
RefSeq NC_021237
Uniprot ID A0A2C9EVS4_PSEPH, Q4K3P0_PSEF5
KEGG ID pprc:PFLCHA0_c60440, pfl:PFL_6085
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
FHA PF00498.28 1.8e-13 30..97
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-494 MSLCLTITSYHKITPGQCPEKLMDQGMMAIGRSSDNDWVLPDPERLVSARHCVIQYKDGRYYLTDNSTNGVELVRAGIRMRRGSSEPLEDGEVIRIGDYEISARIDFSLNRPGAEPFSGDSSNSFEALMGRQAASPTPIEPISMAPVAHFQGASAQDTFPDLFDFLAPSATPPATQPDHVPAEQHDFRPPTPTAVPQPVAPPEPSAPQGGAVIPEDWDLFGSTPASPAPVPSAPPVVAPPVVAAAPIAHQASFAAEPAQPQPQPQPQPQPIAQAPVAPVVSEVELAPVVTPAPAPVAPQGDLLQAFLRGAGLDQLRIEPQQAQAQMESLGRSYRLMVEGLIDVLRARSSLKGEFRMQQTMIRPVENNPLKFAPNVDEAMLLLLRHSNQAFMAPDQAVQDSFDDLRAHQLAVMAGVEAAIKHLLGRFEPTELEARMARPGGLGNLFSGSRQAQNWQQFTALYKQISQEAQDDFQDLFGREFSRAYEEHTHRLRRS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9588 - -


  Protein sequence: 495 a.a.    

>T6CP012265 NC_021237:c6706221-6704737 [Pseudomonas protegens CHA0] [FHA]
MSLCLTITSYHKITPGQCPEKLMDQGMMAIGRSSDNDWVLPDPERLVSARHCVIQYKDGRYYLTDNSTNGVELVRAGIRM
RRGSSEPLEDGEVIRIGDYEISARIDFSLNRPGAEPFSGDSSNSFEALMGRQAASPTPIEPISMAPVAHFQGASAQDTFP
DLFDFLAPSATPPATQPDHVPAEQHDFRPPTPTAVPQPVAPPEPSAPQGGAVIPEDWDLFGSTPASPAPVPSAPPVVAPP
VVAAAPIAHQASFAAEPAQPQPQPQPQPQPIAQAPVAPVVSEVELAPVVTPAPAPVAPQGDLLQAFLRGAGLDQLRIEPQ
QAQAQMESLGRSYRLMVEGLIDVLRARSSLKGEFRMQQTMIRPVENNPLKFAPNVDEAMLLLLRHSNQAFMAPDQAVQDS
FDDLRAHQLAVMAGVEAAIKHLLGRFEPTELEARMARPGGLGNLFSGSRQAQNWQQFTALYKQISQEAQDDFQDLFGREF
SRAYEEHTHRLRRS*

  Nucleotide sequence: 1485 bp    

>T6CP012265 NC_021237:c6706221-6704737 [Pseudomonas protegens CHA0] [FHA]
ATGTCGCTGTGTTTGACTATCACTAGTTATCACAAGATTACCCCTGGTCAATGCCCTGAAAAACTAATGGACCAGGGAAT
GATGGCAATTGGCCGCAGTTCCGATAATGACTGGGTACTTCCTGATCCCGAACGCTTAGTTTCCGCGCGGCACTGTGTCA
TCCAATACAAGGATGGCCGTTATTATTTGACCGATAACAGTACTAATGGTGTGGAGTTAGTCCGTGCCGGTATTCGTATG
CGCCGGGGTAGCAGCGAGCCTCTGGAAGATGGCGAGGTTATTCGCATTGGCGATTATGAAATCAGTGCGCGCATCGATTT
CAGTCTGAACCGCCCGGGGGCTGAACCCTTTTCCGGGGACAGCTCCAATAGTTTCGAGGCGCTGATGGGGCGTCAGGCGG
CTTCGCCGACCCCCATCGAACCGATTTCCATGGCCCCGGTGGCGCACTTCCAGGGTGCCTCGGCCCAGGACACCTTTCCC
GATCTGTTCGACTTTCTCGCCCCCAGCGCGACCCCGCCGGCCACCCAGCCGGACCACGTGCCGGCCGAGCAGCACGATTT
TCGCCCGCCGACCCCCACCGCGGTGCCCCAGCCCGTGGCACCGCCTGAGCCATCGGCGCCCCAGGGCGGGGCGGTGATTC
CGGAGGACTGGGACCTGTTCGGCTCGACGCCCGCAAGCCCTGCGCCAGTGCCCAGTGCGCCGCCCGTGGTTGCCCCGCCG
GTGGTTGCTGCCGCGCCGATTGCCCACCAGGCCTCGTTCGCGGCAGAACCCGCGCAGCCGCAGCCGCAGCCGCAGCCGCA
GCCGCAGCCGATCGCCCAGGCGCCCGTGGCACCGGTGGTTTCCGAAGTGGAGCTGGCTCCTGTTGTCACGCCCGCGCCGG
CCCCGGTCGCCCCCCAGGGGGATCTGCTCCAGGCCTTCCTGCGCGGGGCCGGGCTCGATCAACTGCGTATCGAGCCGCAG
CAGGCCCAGGCCCAGATGGAAAGCCTGGGTCGCAGCTACCGGTTGATGGTCGAGGGCCTGATCGATGTGTTGCGTGCCCG
CAGCAGCCTCAAGGGCGAGTTCCGCATGCAGCAGACGATGATCCGCCCGGTGGAAAACAACCCGCTGAAGTTCGCCCCCA
ATGTGGACGAGGCGATGCTCCTGCTGCTGCGTCACAGCAACCAGGCATTCATGGCTCCGGATCAGGCCGTGCAGGACAGT
TTCGATGACCTGCGGGCGCACCAGCTGGCGGTCATGGCCGGTGTGGAAGCGGCCATCAAGCACCTGCTGGGGCGCTTCGA
GCCCACTGAACTGGAAGCTCGCATGGCTCGCCCCGGCGGCCTGGGCAACCTGTTCAGCGGCTCGCGCCAGGCGCAGAACT
GGCAGCAGTTCACTGCACTCTACAAACAGATTTCCCAAGAGGCCCAGGACGATTTCCAGGACCTCTTCGGTCGTGAGTTC
AGCCGCGCCTATGAAGAACACACCCACCGGCTGCGCCGTTCCTGA