Detailed information of component protein


Summary

Component ID T6CP011986
Component protein type PAAR
T6SS ID (Type) T6SS00548 experimental (Type i2)
Strain Klebsiella pneumoniae subsp. pneumoniae HS11286
Replicon chromosome
Sequence Protein sequence (86 a.a.); Nucleotide sequence (258 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) KPHS_23120
Coordinate (Strand) 2343463..2343720 (+)
NCBI ID YP_005226612.1
RefSeq NC_016845
Uniprot ID A0A0H3GMD1_KLEPH
KEGG ID kpm:KPHS_23120
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
PAAR_motif PF05488.15 3.5e-16 8..76
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-85 MNKVIRKGDTLREYGGRVLMGHYQCFGLGFACKGDPVKCNKHGMTTIAEGSARTTIDGQPVALHGHRCACGCTLVSSNPDCGVDQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.4275 - -


  Protein sequence: 86 a.a.    

>T6CP011986 NC_016845:2343463-2343720 [Klebsiella pneumoniae subsp. pneumoniae HS11286] [PAAR]
MNKVIRKGDTLREYGGRVLMGHYQCFGLGFACKGDPVKCNKHGMTTIAEGSARTTIDGQPVALHGHRCACGCTLVSSNPD
CGVDQ*

  Nucleotide sequence: 258 bp    

>T6CP011986 NC_016845:2343463-2343720 [Klebsiella pneumoniae subsp. pneumoniae HS11286] [PAAR]
ATGAATAAAGTCATTCGCAAAGGCGATACCCTGCGGGAGTATGGGGGCAGGGTGCTGATGGGGCATTATCAGTGTTTTGG
TCTGGGGTTCGCCTGCAAGGGCGACCCGGTCAAGTGTAACAAACACGGTATGACGACCATTGCTGAAGGCAGCGCACGAA
CAACGATTGATGGCCAGCCGGTTGCGCTGCACGGTCATCGCTGCGCCTGCGGCTGCACGCTGGTCAGCTCTAACCCAGAC
TGCGGGGTTGATCAGTGA