Detailed information of component protein


Summary

Component ID T6CP011809
Component protein type FHA
T6SS ID (Type) T6SS00382 experimental (Type i3)
Strain Xenorhabdus bovienii SS-2004
Replicon chromosome
Sequence Protein sequence (519 a.a.); Nucleotide sequence (1557 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) XBJ1_RS08930
Coordinate (Strand) 2059923..2061479 (-)
NCBI ID WP_038198787.1
RefSeq NC_013892
Uniprot ID -
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-518 IMRFTIVKNIGTSQPQQLSYDFMPPGGTIGRSPDNNWILPDEGQAIARLQATVSVSIDGECRMTNRGAASDILLNTIPIAPDRRIEIRDGDTLNIGDYQIQVININQGSNNTNSVNTPPLTTIRKDIPSEIWDGLENTFTPDESMPQTPQQVAKTLNDNNPLIKPQRHQERNPINPLEQMETIIDLDSLQHRATDPITMFNANTDSQQENILNDSTPSTLLQQGNQRDKPEIDPLILFSDKHRRGILHDEPLNWVMENAEPLVAQANTGSSDPQYGASDPPFHRHNNEHLDIDPVTYPPNPHQPDQAEEGVKLEGQLLAALLEGMGLNHLQNLQFDGHTLYKLGKLLSQLSQGIIALNASRTQLKYETDTGVAQILVDGNNPFALFPSGQAVLIQMIGEHMPGFMSAEQATRDILIELQAHQLGMIAGLRTITAEMLQRFDPLVVKQKAQAAGRLPRLALSSTYKAALWDYFTKHYQKNMEKIEQDHTIFGEQFRQAYESEIIRYKHSQDKLKNKDKK



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9549 - -



  Protein sequence: 519 a.a.    

>T6CP011809 NC_013892:c2061479-2059923 [Xenorhabdus bovienii SS-2004] [FHA]
IMRFTIVKNIGTSQPQQLSYDFMPPGGTIGRSPDNNWILPDEGQAIARLQATVSVSIDGECRMTNRGAASDILLNTIPIA
PDRRIEIRDGDTLNIGDYQIQVININQGSNNTNSVNTPPLTTIRKDIPSEIWDGLENTFTPDESMPQTPQQVAKTLNDNN
PLIKPQRHQERNPINPLEQMETIIDLDSLQHRATDPITMFNANTDSQQENILNDSTPSTLLQQGNQRDKPEIDPLILFSD
KHRRGILHDEPLNWVMENAEPLVAQANTGSSDPQYGASDPPFHRHNNEHLDIDPVTYPPNPHQPDQAEEGVKLEGQLLAA
LLEGMGLNHLQNLQFDGHTLYKLGKLLSQLSQGIIALNASRTQLKYETDTGVAQILVDGNNPFALFPSGQAVLIQMIGEH
MPGFMSAEQATRDILIELQAHQLGMIAGLRTITAEMLQRFDPLVVKQKAQAAGRLPRLALSSTYKAALWDYFTKHYQKNM
EKIEQDHTIFGEQFRQAYESEIIRYKHSQDKLKNKDKK*

  Nucleotide sequence: 1557 bp    

>T6CP011809 NC_013892:c2061479-2059923 [Xenorhabdus bovienii SS-2004] [FHA]
ATTATGCGATTCACCATTGTTAAAAATATTGGTACAAGCCAGCCGCAACAACTGAGTTATGATTTTATGCCACCCGGTGG
CACAATTGGCCGCTCCCCAGATAATAACTGGATTTTGCCCGATGAAGGGCAGGCTATAGCTCGTTTACAGGCCACTGTAT
CTGTTTCCATCGATGGAGAATGTCGTATGACCAATCGGGGGGCTGCCTCTGATATTTTGTTAAATACCATCCCCATCGCT
CCCGACCGGAGGATTGAAATACGCGATGGTGATACGTTAAATATCGGTGATTACCAAATCCAAGTCATTAATATTAACCA
AGGTTCGAATAATACGAATAGTGTGAACACGCCACCATTGACAACAATTCGCAAAGATATTCCCAGTGAAATTTGGGATG
GATTGGAGAACACGTTTACGCCCGATGAAAGCATGCCTCAGACTCCCCAACAAGTTGCTAAGACACTCAATGACAATAAT
CCACTCATAAAACCTCAGCGGCATCAGGAACGTAATCCAATAAACCCTCTCGAACAGATGGAAACAATAATTGATCTGGA
TTCCTTGCAACACCGTGCCACGGATCCAATCACGATGTTTAATGCAAACACGGATAGCCAGCAGGAAAATATTCTCAATG
ACAGTACGCCCAGTACCTTATTGCAGCAGGGCAATCAGCGCGATAAACCAGAAATTGATCCCCTGATTCTATTTTCCGAT
AAACATCGGCGGGGGATTTTGCATGATGAGCCGCTAAATTGGGTAATGGAGAATGCTGAACCTTTGGTCGCACAGGCTAA
TACAGGCTCTTCTGACCCTCAATATGGTGCCAGTGATCCCCCTTTCCACCGTCATAACAATGAACACTTGGATATCGACC
CAGTGACATATCCGCCTAATCCCCATCAACCCGATCAGGCCGAAGAAGGTGTTAAATTAGAGGGTCAACTCTTAGCCGCT
TTATTGGAGGGTATGGGGCTTAATCATCTCCAAAACCTGCAATTTGATGGGCATACCCTGTATAAACTGGGGAAATTACT
TAGCCAGTTATCACAAGGCATTATAGCGTTAAATGCGTCACGCACACAGTTGAAATATGAGACTGATACCGGAGTTGCCC
AGATTCTGGTGGATGGCAACAATCCCTTTGCACTTTTTCCTTCGGGTCAAGCGGTGCTGATCCAAATGATTGGCGAACAT
ATGCCAGGATTTATGTCAGCAGAACAGGCAACACGAGATATTTTAATCGAGTTACAAGCACATCAATTGGGTATGATTGC
CGGTTTACGCACTATTACGGCAGAGATGTTACAACGATTTGATCCCTTAGTGGTTAAACAAAAAGCACAAGCTGCCGGCA
GACTGCCTCGTTTGGCATTATCATCAACGTATAAAGCTGCTTTATGGGACTATTTCACCAAACATTATCAGAAAAATATG
GAAAAAATTGAACAGGATCACACTATATTTGGTGAACAGTTTCGGCAAGCCTATGAGTCAGAAATTATCCGATATAAACA
CTCACAAGATAAATTAAAGAACAAAGATAAAAAATAA