Detailed information of component protein


Summary

Component ID T6CP011757
Component protein type PAAR
T6SS ID (Type) T6SS00346 experimental (Type i4b)
Strain Edwardsiella ictaluri 93-146
Replicon chromosome
Sequence Protein sequence (101 a.a.); Nucleotide sequence (303 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) NT01EI_RS11935
Coordinate (Strand) 2643804..2644106 (+)
NCBI ID WP_015872015.1
RefSeq NC_012779
Uniprot ID C5BAE4_EDWI9
KEGG ID eic:NT01EI_2746
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
PAAR_motif PF05488.15 1.3e-25 24..89
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-100 MGQPAARLTDMHVCPMQTPGVPPVPHVGGPVIGPGVPTVLIGGLPAAVLGDMLTCVGPPDTIVKGSATVLIGGKPAARMGDSTAHGGTITLGCPTVLIGG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.8969 - -


  Protein sequence: 101 a.a.    

>T6CP011757 NC_012779:2643804-2644106 [Edwardsiella ictaluri 93-146] [PAAR]
MGQPAARLTDMHVCPMQTPGVPPVPHVGGPVIGPGVPTVLIGGLPAAVLGDMLTCVGPPDTIVKGSATVLIGGKPAARMG
DSTAHGGTITLGCPTVLIGG*

  Nucleotide sequence: 303 bp    

>T6CP011757 NC_012779:2643804-2644106 [Edwardsiella ictaluri 93-146] [PAAR]
ATGGGACAACCTGCCGCACGTTTGACGGATATGCATGTCTGCCCGATGCAGACCCCGGGCGTCCCCCCGGTACCGCACGT
CGGCGGGCCAGTCATCGGCCCCGGCGTTCCCACGGTACTGATCGGTGGACTGCCGGCGGCGGTACTGGGTGACATGCTGA
CCTGTGTTGGTCCTCCCGACACCATTGTCAAGGGCAGTGCCACAGTGCTGATCGGTGGCAAGCCCGCCGCCCGCATGGGG
GACAGCACAGCTCACGGCGGCACCATCACGCTGGGTTGCCCCACCGTGTTGATTGGCGGTTAA